miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 126687 0.67 0.771152
Target:  5'- cCGAaucgGGGAgGGAGGGGCgccgcggacucGGGGCgAGg -3'
miRNA:   3'- -GCUg---CCCUgCCUUCUCG-----------UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 53795 0.67 0.761191
Target:  5'- cCGGCGGGuuucucgGCGGGAGccucGGCGGGaGCCu-- -3'
miRNA:   3'- -GCUGCCC-------UGCCUUC----UCGUCC-CGGuca -5'
10768 3' -59.7 NC_002794.1 + 51259 0.67 0.752945
Target:  5'- gCGugGGGGCGGGccgGGAGgCAGGcGCg--- -3'
miRNA:   3'- -GCugCCCUGCCU---UCUC-GUCC-CGguca -5'
10768 3' -59.7 NC_002794.1 + 127656 0.67 0.759365
Target:  5'- cCGACGGGGgGGAAaagccggggaccucGAGCccGGUCGGg -3'
miRNA:   3'- -GCUGCCCUgCCUU--------------CUCGucCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 176585 0.67 0.742761
Target:  5'- aGACGGGAUGugacucacGGAGAGCGGccggcacGGCCAu- -3'
miRNA:   3'- gCUGCCCUGC--------CUUCUCGUC-------CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 9314 0.67 0.752024
Target:  5'- aCGGCGGGAaagaGGAAGGaaacGCGGGugcgugcGCCGGc -3'
miRNA:   3'- -GCUGCCCUg---CCUUCU----CGUCC-------CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 86141 0.67 0.771152
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCAc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 139996 0.67 0.771152
Target:  5'- -cGCGGGACGGugcGGGUGGaGGCCGc- -3'
miRNA:   3'- gcUGCCCUGCCuu-CUCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 96881 0.67 0.788904
Target:  5'- gGACGGuGGCGcuacGGGGCAGGcGUCGGg -3'
miRNA:   3'- gCUGCC-CUGCcu--UCUCGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 78332 0.67 0.788904
Target:  5'- gCGACGGG-CGGAGGcGCcggaaugucGGCCAGc -3'
miRNA:   3'- -GCUGCCCuGCCUUCuCGuc-------CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 70266 0.67 0.788904
Target:  5'- gCGACGGaggccgcgaaGGCcGGAGAGCAGG-CCGGg -3'
miRNA:   3'- -GCUGCC----------CUGcCUUCUCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 149845 0.67 0.780089
Target:  5'- gGACGaGGACGGGGacGAGgAGcGGCCGc- -3'
miRNA:   3'- gCUGC-CCUGCCUU--CUCgUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 32883 0.67 0.780089
Target:  5'- gCGGCGGcGGCGGcaucauGGAGCGGaaCCAGUc -3'
miRNA:   3'- -GCUGCC-CUGCCu-----UCUCGUCccGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 101641 0.67 0.780089
Target:  5'- gCGAgCGuGGGCGGgcGGGCGGcGGUUAGc -3'
miRNA:   3'- -GCU-GC-CCUGCCuuCUCGUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 120128 0.67 0.780089
Target:  5'- gCGACGGcGACcGggGAc--GGGCCGGUg -3'
miRNA:   3'- -GCUGCC-CUGcCuuCUcguCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 110614 0.67 0.774741
Target:  5'- -aGCGGaGCGGGAGccgcggcgccgcggcGGCGGGGUCGGg -3'
miRNA:   3'- gcUGCCcUGCCUUC---------------UCGUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 136123 0.68 0.734348
Target:  5'- uGGCGGG-CGaagucGAAGAGgAGGGCgAGg -3'
miRNA:   3'- gCUGCCCuGC-----CUUCUCgUCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 36417 0.68 0.715424
Target:  5'- gCGGCGGcugaugaaGCGGAAGAcCAGGcGCCGGa -3'
miRNA:   3'- -GCUGCCc-------UGCCUUCUcGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 116133 0.68 0.734348
Target:  5'- gCGGCGGcGGCGGcGGcGGcCAGGGCCu-- -3'
miRNA:   3'- -GCUGCC-CUGCCuUC-UC-GUCCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 7823 0.68 0.719232
Target:  5'- -aGCGGGA-GGggGGGCcguccaucgggacggGGGGUCAGg -3'
miRNA:   3'- gcUGCCCUgCCuuCUCG---------------UCCCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.