miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 7823 0.68 0.719232
Target:  5'- -aGCGGGA-GGggGGGCcguccaucgggacggGGGGUCAGg -3'
miRNA:   3'- gcUGCCCUgCCuuCUCG---------------UCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 116133 0.68 0.734348
Target:  5'- gCGGCGGcGGCGGcGGcGGcCAGGGCCu-- -3'
miRNA:   3'- -GCUGCC-CUGCCuUC-UC-GUCCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 36417 0.68 0.715424
Target:  5'- gCGGCGGcugaugaaGCGGAAGAcCAGGcGCCGGa -3'
miRNA:   3'- -GCUGCCc-------UGCCUUCUcGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 136123 0.68 0.734348
Target:  5'- uGGCGGG-CGaagucGAAGAGgAGGGCgAGg -3'
miRNA:   3'- gCUGCCCuGC-----CUUCUCgUCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 140190 0.68 0.734348
Target:  5'- gCGACGGcGuCGucGAGGGGCGacccGGGCCGGa -3'
miRNA:   3'- -GCUGCC-CuGC--CUUCUCGU----CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 191996 0.69 0.627947
Target:  5'- aCGGcCGGGACGGuAGcGGCGGuGGCCGc- -3'
miRNA:   3'- -GCU-GCCCUGCCuUC-UCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 106338 0.69 0.627947
Target:  5'- uCGACGGuucgccgggucGACGGc-GGGCGGGcGCCGGUu -3'
miRNA:   3'- -GCUGCC-----------CUGCCuuCUCGUCC-CGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 142387 0.69 0.646573
Target:  5'- gCGGCGGaGACGGcGGuGCAGGcggcgucggcggcGCCGGg -3'
miRNA:   3'- -GCUGCC-CUGCCuUCuCGUCC-------------CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 115978 0.69 0.627947
Target:  5'- -aGCGGGACGG-GGAGCGGcGCCGc- -3'
miRNA:   3'- gcUGCCCUGCCuUCUCGUCcCGGUca -5'
10768 3' -59.7 NC_002794.1 + 48428 0.69 0.647553
Target:  5'- gGAUaGGGCGGAGGuGGCGGcGGCCAu- -3'
miRNA:   3'- gCUGcCCUGCCUUC-UCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 147134 0.69 0.647553
Target:  5'- aCGGCGGuucgaGACGGccccGGGGCcgcgAGGGCCAGc -3'
miRNA:   3'- -GCUGCC-----CUGCCu---UCUCG----UCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 94052 0.69 0.667113
Target:  5'- gCGGCGGuGCGGggGcGGCggGGGGCgAGg -3'
miRNA:   3'- -GCUGCCcUGCCuuC-UCG--UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 107587 0.69 0.675885
Target:  5'- aCGGCGGagaagacGGCGGggGAGaCGGGGaagaCGGg -3'
miRNA:   3'- -GCUGCC-------CUGCCuuCUC-GUCCCg---GUCa -5'
10768 3' -59.7 NC_002794.1 + 116445 0.69 0.676858
Target:  5'- cCGACGGuGGCGaugacGAAGAGC--GGCCGGUu -3'
miRNA:   3'- -GCUGCC-CUGC-----CUUCUCGucCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 95745 0.69 0.676858
Target:  5'- gGACGGGGCuGGuacucgcGGGGCGGcGGCCGc- -3'
miRNA:   3'- gCUGCCCUG-CCu------UCUCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 60514 0.7 0.598577
Target:  5'- uCGACGGcACGGAGGGGCuGGuggagaagccguGCCAGc -3'
miRNA:   3'- -GCUGCCcUGCCUUCUCGuCC------------CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 159291 0.7 0.608353
Target:  5'- cCGACGaGGGCGGAGGuGGCAGcuaGCCAu- -3'
miRNA:   3'- -GCUGC-CCUGCCUUC-UCGUCc--CGGUca -5'
10768 3' -59.7 NC_002794.1 + 178048 0.7 0.598577
Target:  5'- uGACGGGuggagacUGGAAGAGCgAGGGauCCGGg -3'
miRNA:   3'- gCUGCCCu------GCCUUCUCG-UCCC--GGUCa -5'
10768 3' -59.7 NC_002794.1 + 108358 0.7 0.618145
Target:  5'- -aGCGGGgaGCGGAGGAGgacCGGGcGCCGGa -3'
miRNA:   3'- gcUGCCC--UGCCUUCUC---GUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 182291 0.7 0.615206
Target:  5'- uGACGGGGCGGGuggacGGGCAGacgggcggacgggcGGUCGGg -3'
miRNA:   3'- gCUGCCCUGCCUu----CUCGUC--------------CCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.