Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 45582 | 0.74 | 0.390088 |
Target: 5'- aGAUGGG-CGGc--AGCAGGGCCGGg -3' miRNA: 3'- gCUGCCCuGCCuucUCGUCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 3761 | 0.75 | 0.33654 |
Target: 5'- aCGGCGGGGCGGggGAgugacucaGCGGGaGCCc-- -3' miRNA: 3'- -GCUGCCCUGCCuuCU--------CGUCC-CGGuca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 20397 | 0.78 | 0.219063 |
Target: 5'- gCGGCGGGACcg-GGAGCGGGGCCAc- -3' miRNA: 3'- -GCUGCCCUGccuUCUCGUCCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 14618 | 0.79 | 0.189998 |
Target: 5'- gCGACGGGGCcGGAGA-CGGGGCCGGg -3' miRNA: 3'- -GCUGCCCUGcCUUCUcGUCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 94222 | 0.8 | 0.16842 |
Target: 5'- uGGCGGcGACGGgcGGGC-GGGCCGGUg -3' miRNA: 3'- gCUGCC-CUGCCuuCUCGuCCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 98469 | 1.06 | 0.002805 |
Target: 5'- uCGACGGGACGGAAGAGCAGGGCCAGUu -3' miRNA: 3'- -GCUGCCCUGCCUUCUCGUCCCGGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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