miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 98469 1.06 0.002805
Target:  5'- uCGACGGGACGGAAGAGCAGGGCCAGUu -3'
miRNA:   3'- -GCUGCCCUGCCUUCUCGUCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 94222 0.8 0.16842
Target:  5'- uGGCGGcGACGGgcGGGC-GGGCCGGUg -3'
miRNA:   3'- gCUGCC-CUGCCuuCUCGuCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 14618 0.79 0.189998
Target:  5'- gCGACGGGGCcGGAGA-CGGGGCCGGg -3'
miRNA:   3'- -GCUGCCCUGcCUUCUcGUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 20397 0.78 0.219063
Target:  5'- gCGGCGGGACcg-GGAGCGGGGCCAc- -3'
miRNA:   3'- -GCUGCCCUGccuUCUCGUCCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 3761 0.75 0.33654
Target:  5'- aCGGCGGGGCGGggGAgugacucaGCGGGaGCCc-- -3'
miRNA:   3'- -GCUGCCCUGCCuuCU--------CGUCC-CGGuca -5'
10768 3' -59.7 NC_002794.1 + 116409 0.74 0.382105
Target:  5'- uGGCGGGGCGcGAgcaccAGGGCGcGGGUCAGg -3'
miRNA:   3'- gCUGCCCUGC-CU-----UCUCGU-CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 95820 0.74 0.389285
Target:  5'- gCGGCGGcGGcCGGggGAGCGGcggcggcGGCCGGg -3'
miRNA:   3'- -GCUGCC-CU-GCCuuCUCGUC-------CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 45582 0.74 0.390088
Target:  5'- aGAUGGG-CGGc--AGCAGGGCCGGg -3'
miRNA:   3'- gCUGCCCuGCCuucUCGUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 42574 0.73 0.448035
Target:  5'- gCGGCGgacccgcGGACGGAGGAgggcGCGGcGGCCGGg -3'
miRNA:   3'- -GCUGC-------CCUGCCUUCU----CGUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 143313 0.73 0.435029
Target:  5'- gCGGCGGGAUGGAAGucggucgcgugcucgGGCAgcGGGCuCGGg -3'
miRNA:   3'- -GCUGCCCUGCCUUC---------------UCGU--CCCG-GUCa -5'
10768 3' -59.7 NC_002794.1 + 188250 0.73 0.423089
Target:  5'- cCGGCGGcGGCGGcGGuAGCGgcGGGCCGGg -3'
miRNA:   3'- -GCUGCC-CUGCCuUC-UCGU--CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 183594 0.72 0.502085
Target:  5'- gGugGGGGCGGAGGGgggccgcGCGcGGCCGGc -3'
miRNA:   3'- gCugCCCUGCCUUCU-------CGUcCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 118327 0.72 0.475577
Target:  5'- gCGACGGGcgGCGaGAAGAGCAGGucGCCc-- -3'
miRNA:   3'- -GCUGCCC--UGC-CUUCUCGUCC--CGGuca -5'
10768 3' -59.7 NC_002794.1 + 32582 0.72 0.484641
Target:  5'- gCGGCGGuGcCGGGgccGGGGcCGGGGCCGGg -3'
miRNA:   3'- -GCUGCC-CuGCCU---UCUC-GUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87177 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87156 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87198 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 44267 0.71 0.521677
Target:  5'- uCGGCcgccgGGGACGGAGGAGUccgcgcccgccGGGCCGGc -3'
miRNA:   3'- -GCUG-----CCCUGCCUUCUCGu----------CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87240 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87093 0.71 0.550158
Target:  5'- gGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.