Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 126687 | 0.67 | 0.771152 |
Target: 5'- cCGAaucgGGGAgGGAGGGGCgccgcggacucGGGGCgAGg -3' miRNA: 3'- -GCUg---CCCUgCCUUCUCG-----------UCCCGgUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 9314 | 0.67 | 0.752024 |
Target: 5'- aCGGCGGGAaagaGGAAGGaaacGCGGGugcgugcGCCGGc -3' miRNA: 3'- -GCUGCCCUg---CCUUCU----CGUCC-------CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 176585 | 0.67 | 0.742761 |
Target: 5'- aGACGGGAUGugacucacGGAGAGCGGccggcacGGCCAu- -3' miRNA: 3'- gCUGCCCUGC--------CUUCUCGUC-------CCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 127656 | 0.67 | 0.759365 |
Target: 5'- cCGACGGGGgGGAAaagccggggaccucGAGCccGGUCGGg -3' miRNA: 3'- -GCUGCCCUgCCUU--------------CUCGucCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 51259 | 0.67 | 0.752945 |
Target: 5'- gCGugGGGGCGGGccgGGAGgCAGGcGCg--- -3' miRNA: 3'- -GCugCCCUGCCU---UCUC-GUCC-CGguca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 53795 | 0.67 | 0.761191 |
Target: 5'- cCGGCGGGuuucucgGCGGGAGccucGGCGGGaGCCu-- -3' miRNA: 3'- -GCUGCCC-------UGCCUUC----UCGUCC-CGGuca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 40110 | 0.67 | 0.762101 |
Target: 5'- aCGACGGGggcGCGcGAGAGCGGaGaGCCAc- -3' miRNA: 3'- -GCUGCCC---UGCcUUCUCGUC-C-CGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87282 | 0.67 | 0.762101 |
Target: 5'- nGGCGGGugGGGguGGGGaagcGGGCCu-- -3' miRNA: 3'- gCUGCCCugCCU--UCUCgu--CCCGGuca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 8437 | 0.66 | 0.814541 |
Target: 5'- aGAgGGGGCGGGugaaaAGCGGGGaCCuGa -3' miRNA: 3'- gCUgCCCUGCCUuc---UCGUCCC-GGuCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 55279 | 0.66 | 0.814541 |
Target: 5'- gCGGCGGuGGCGGcgacGAGGGCGGcGGCg--- -3' miRNA: 3'- -GCUGCC-CUGCC----UUCUCGUC-CCGguca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86189 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 125737 | 0.66 | 0.830885 |
Target: 5'- aGGCGGaGGCGGGccgcGGGaCGGcGGCCGGc -3' miRNA: 3'- gCUGCC-CUGCCUu---CUC-GUC-CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86333 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 23468 | 0.66 | 0.806137 |
Target: 5'- aCGuCGGGGCGGAGGGGUcu-GCCAu- -3' miRNA: 3'- -GCuGCCCUGCCUUCUCGuccCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 9740 | 0.66 | 0.806137 |
Target: 5'- --cCGGGugGGuagguGGGGGgGGGGUCAGa -3' miRNA: 3'- gcuGCCCugCC-----UUCUCgUCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 127918 | 0.66 | 0.797589 |
Target: 5'- cCGAgGGGGCGGGGauuCGGGGCguGUc -3' miRNA: 3'- -GCUgCCCUGCCUUcucGUCCCGguCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95015 | 0.66 | 0.797589 |
Target: 5'- uGAUGGGGCGGcuGuGCGGcaucucGCCGGUg -3' miRNA: 3'- gCUGCCCUGCCuuCuCGUCc-----CGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 92305 | 0.66 | 0.797589 |
Target: 5'- aGGCGGGGCuGGGcgcgGGcGGCGGGGgcCCGGg -3' miRNA: 3'- gCUGCCCUG-CCU----UC-UCGUCCC--GGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 145560 | 0.66 | 0.797589 |
Target: 5'- cCGACcGGuucGCGGAcgagcgccgacGGAGCGGcGGCCGGc -3' miRNA: 3'- -GCUGcCC---UGCCU-----------UCUCGUC-CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 146744 | 0.66 | 0.806137 |
Target: 5'- aCGACGGGccGCGGAucGGGGgAGGGacgaUGGUc -3' miRNA: 3'- -GCUGCCC--UGCCU--UCUCgUCCCg---GUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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