Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 87093 | 0.71 | 0.550158 |
Target: 5'- gGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87240 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87261 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87219 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 101585 | 0.71 | 0.550158 |
Target: 5'- cCGcCGcGGcCGGggGGGCGGGuGCCGGc -3' miRNA: 3'- -GCuGC-CCuGCCuuCUCGUCC-CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87135 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 178048 | 0.7 | 0.598577 |
Target: 5'- uGACGGGuggagacUGGAAGAGCgAGGGauCCGGg -3' miRNA: 3'- gCUGCCCu------GCCUUCUCG-UCCC--GGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 60514 | 0.7 | 0.598577 |
Target: 5'- uCGACGGcACGGAGGGGCuGGuggagaagccguGCCAGc -3' miRNA: 3'- -GCUGCCcUGCCUUCUCGuCC------------CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 159291 | 0.7 | 0.608353 |
Target: 5'- cCGACGaGGGCGGAGGuGGCAGcuaGCCAu- -3' miRNA: 3'- -GCUGC-CCUGCCUUC-UCGUCc--CGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 182291 | 0.7 | 0.615206 |
Target: 5'- uGACGGGGCGGGuggacGGGCAGacgggcggacgggcGGUCGGg -3' miRNA: 3'- gCUGCCCUGCCUu----CUCGUC--------------CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 108358 | 0.7 | 0.618145 |
Target: 5'- -aGCGGGgaGCGGAGGAGgacCGGGcGCCGGa -3' miRNA: 3'- gcUGCCC--UGCCUUCUC---GUCC-CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 191996 | 0.69 | 0.627947 |
Target: 5'- aCGGcCGGGACGGuAGcGGCGGuGGCCGc- -3' miRNA: 3'- -GCU-GCCCUGCCuUC-UCGUC-CCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 106338 | 0.69 | 0.627947 |
Target: 5'- uCGACGGuucgccgggucGACGGc-GGGCGGGcGCCGGUu -3' miRNA: 3'- -GCUGCC-----------CUGCCuuCUCGUCC-CGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 115978 | 0.69 | 0.627947 |
Target: 5'- -aGCGGGACGG-GGAGCGGcGCCGc- -3' miRNA: 3'- gcUGCCCUGCCuUCUCGUCcCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 142387 | 0.69 | 0.646573 |
Target: 5'- gCGGCGGaGACGGcGGuGCAGGcggcgucggcggcGCCGGg -3' miRNA: 3'- -GCUGCC-CUGCCuUCuCGUCC-------------CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 48428 | 0.69 | 0.647553 |
Target: 5'- gGAUaGGGCGGAGGuGGCGGcGGCCAu- -3' miRNA: 3'- gCUGcCCUGCCUUC-UCGUC-CCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 147134 | 0.69 | 0.647553 |
Target: 5'- aCGGCGGuucgaGACGGccccGGGGCcgcgAGGGCCAGc -3' miRNA: 3'- -GCUGCC-----CUGCCu---UCUCG----UCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 94052 | 0.69 | 0.667113 |
Target: 5'- gCGGCGGuGCGGggGcGGCggGGGGCgAGg -3' miRNA: 3'- -GCUGCCcUGCCuuC-UCG--UCCCGgUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 107587 | 0.69 | 0.675885 |
Target: 5'- aCGGCGGagaagacGGCGGggGAGaCGGGGaagaCGGg -3' miRNA: 3'- -GCUGCC-------CUGCCuuCUC-GUCCCg---GUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 116445 | 0.69 | 0.676858 |
Target: 5'- cCGACGGuGGCGaugacGAAGAGC--GGCCGGUu -3' miRNA: 3'- -GCUGCC-CUGC-----CUUCUCGucCCGGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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