miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 95745 0.69 0.676858
Target:  5'- gGACGGGGCuGGuacucgcGGGGCGGcGGCCGc- -3'
miRNA:   3'- gCUGCCCUG-CCu------UCUCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 112358 0.68 0.68657
Target:  5'- gCGGCGGGGCGGGgagcugcuGGAacucggcacGCAGGGCg--- -3'
miRNA:   3'- -GCUGCCCUGCCU--------UCU---------CGUCCCGguca -5'
10768 3' -59.7 NC_002794.1 + 40524 0.68 0.68657
Target:  5'- cCGACGcgccGACGGGAGAcGagGGGGCCGGc -3'
miRNA:   3'- -GCUGCc---CUGCCUUCU-Cg-UCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 67935 0.68 0.69624
Target:  5'- gCGACGGGGCGauggccucgaccGAGGAcgGCGGGcCCAGa -3'
miRNA:   3'- -GCUGCCCUGC------------CUUCU--CGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 124016 0.68 0.705861
Target:  5'- gGGCGGccGCGGAAGAGaCGGuGGCCGu- -3'
miRNA:   3'- gCUGCCc-UGCCUUCUC-GUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 36417 0.68 0.715424
Target:  5'- gCGGCGGcugaugaaGCGGAAGAcCAGGcGCCGGa -3'
miRNA:   3'- -GCUGCCc-------UGCCUUCUcGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 7823 0.68 0.719232
Target:  5'- -aGCGGGA-GGggGGGCcguccaucgggacggGGGGUCAGg -3'
miRNA:   3'- gcUGCCCUgCCuuCUCG---------------UCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 136123 0.68 0.734348
Target:  5'- uGGCGGG-CGaagucGAAGAGgAGGGCgAGg -3'
miRNA:   3'- gCUGCCCuGC-----CUUCUCgUCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 140190 0.68 0.734348
Target:  5'- gCGACGGcGuCGucGAGGGGCGacccGGGCCGGa -3'
miRNA:   3'- -GCUGCC-CuGC--CUUCUCGU----CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 116133 0.68 0.734348
Target:  5'- gCGGCGGcGGCGGcGGcGGcCAGGGCCu-- -3'
miRNA:   3'- -GCUGCC-CUGCCuUC-UC-GUCCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 176585 0.67 0.742761
Target:  5'- aGACGGGAUGugacucacGGAGAGCGGccggcacGGCCAu- -3'
miRNA:   3'- gCUGCCCUGC--------CUUCUCGUC-------CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 9314 0.67 0.752024
Target:  5'- aCGGCGGGAaagaGGAAGGaaacGCGGGugcgugcGCCGGc -3'
miRNA:   3'- -GCUGCCCUg---CCUUCU----CGUCC-------CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 51259 0.67 0.752945
Target:  5'- gCGugGGGGCGGGccgGGAGgCAGGcGCg--- -3'
miRNA:   3'- -GCugCCCUGCCU---UCUC-GUCC-CGguca -5'
10768 3' -59.7 NC_002794.1 + 127656 0.67 0.759365
Target:  5'- cCGACGGGGgGGAAaagccggggaccucGAGCccGGUCGGg -3'
miRNA:   3'- -GCUGCCCUgCCUU--------------CUCGucCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 53795 0.67 0.761191
Target:  5'- cCGGCGGGuuucucgGCGGGAGccucGGCGGGaGCCu-- -3'
miRNA:   3'- -GCUGCCC-------UGCCUUC----UCGUCC-CGGuca -5'
10768 3' -59.7 NC_002794.1 + 40110 0.67 0.762101
Target:  5'- aCGACGGGggcGCGcGAGAGCGGaGaGCCAc- -3'
miRNA:   3'- -GCUGCCC---UGCcUUCUCGUC-C-CGGUca -5'
10768 3' -59.7 NC_002794.1 + 87282 0.67 0.762101
Target:  5'- nGGCGGGugGGGguGGGGaagcGGGCCu-- -3'
miRNA:   3'- gCUGCCCugCCU--UCUCgu--CCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 126687 0.67 0.771152
Target:  5'- cCGAaucgGGGAgGGAGGGGCgccgcggacucGGGGCgAGg -3'
miRNA:   3'- -GCUg---CCCUgCCUUCUCG-----------UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 86141 0.67 0.771152
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCAc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 139996 0.67 0.771152
Target:  5'- -cGCGGGACGGugcGGGUGGaGGCCGc- -3'
miRNA:   3'- gcUGCCCUGCCuu-CUCGUC-CCGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.