Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 60514 | 0.7 | 0.598577 |
Target: 5'- uCGACGGcACGGAGGGGCuGGuggagaagccguGCCAGc -3' miRNA: 3'- -GCUGCCcUGCCUUCUCGuCC------------CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 67935 | 0.68 | 0.69624 |
Target: 5'- gCGACGGGGCGauggccucgaccGAGGAcgGCGGGcCCAGa -3' miRNA: 3'- -GCUGCCCUGC------------CUUCU--CGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 70266 | 0.67 | 0.788904 |
Target: 5'- gCGACGGaggccgcgaaGGCcGGAGAGCAGG-CCGGg -3' miRNA: 3'- -GCUGCC----------CUGcCUUCUCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 78332 | 0.67 | 0.788904 |
Target: 5'- gCGACGGG-CGGAGGcGCcggaaugucGGCCAGc -3' miRNA: 3'- -GCUGCCCuGCCUUCuCGuc-------CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86141 | 0.67 | 0.771152 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCAc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86189 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86333 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86381 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86501 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86549 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87093 | 0.71 | 0.550158 |
Target: 5'- gGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87114 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87135 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87156 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87177 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87198 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87219 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87240 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87261 | 0.71 | 0.550158 |
Target: 5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3' miRNA: 3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 87282 | 0.67 | 0.762101 |
Target: 5'- nGGCGGGugGGGguGGGGaagcGGGCCu-- -3' miRNA: 3'- gCUGCCCugCCU--UCUCgu--CCCGGuca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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