Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 92305 | 0.66 | 0.797589 |
Target: 5'- aGGCGGGGCuGGGcgcgGGcGGCGGGGgcCCGGg -3' miRNA: 3'- gCUGCCCUG-CCU----UC-UCGUCCC--GGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 94052 | 0.69 | 0.667113 |
Target: 5'- gCGGCGGuGCGGggGcGGCggGGGGCgAGg -3' miRNA: 3'- -GCUGCCcUGCCuuC-UCG--UCCCGgUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 94222 | 0.8 | 0.16842 |
Target: 5'- uGGCGGcGACGGgcGGGC-GGGCCGGUg -3' miRNA: 3'- gCUGCC-CUGCCuuCUCGuCCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95015 | 0.66 | 0.797589 |
Target: 5'- uGAUGGGGCGGcuGuGCGGcaucucGCCGGUg -3' miRNA: 3'- gCUGCCCUGCCuuCuCGUCc-----CGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95484 | 0.66 | 0.797589 |
Target: 5'- cCGuACGuuGCGGAAcGAGCucGGCCAGUa -3' miRNA: 3'- -GC-UGCccUGCCUU-CUCGucCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95745 | 0.69 | 0.676858 |
Target: 5'- gGACGGGGCuGGuacucgcGGGGCGGcGGCCGc- -3' miRNA: 3'- gCUGCCCUG-CCu------UCUCGUC-CCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95820 | 0.74 | 0.389285 |
Target: 5'- gCGGCGGcGGcCGGggGAGCGGcggcggcGGCCGGg -3' miRNA: 3'- -GCUGCC-CU-GCCuuCUCGUC-------CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 96881 | 0.67 | 0.788904 |
Target: 5'- gGACGGuGGCGcuacGGGGCAGGcGUCGGg -3' miRNA: 3'- gCUGCC-CUGCcu--UCUCGUCC-CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 98469 | 1.06 | 0.002805 |
Target: 5'- uCGACGGGACGGAAGAGCAGGGCCAGUu -3' miRNA: 3'- -GCUGCCCUGCCUUCUCGUCCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 101585 | 0.71 | 0.550158 |
Target: 5'- cCGcCGcGGcCGGggGGGCGGGuGCCGGc -3' miRNA: 3'- -GCuGC-CCuGCCuuCUCGUCC-CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 101641 | 0.67 | 0.780089 |
Target: 5'- gCGAgCGuGGGCGGgcGGGCGGcGGUUAGc -3' miRNA: 3'- -GCU-GC-CCUGCCuuCUCGUC-CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 106338 | 0.69 | 0.627947 |
Target: 5'- uCGACGGuucgccgggucGACGGc-GGGCGGGcGCCGGUu -3' miRNA: 3'- -GCUGCC-----------CUGCCuuCUCGUCC-CGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 107587 | 0.69 | 0.675885 |
Target: 5'- aCGGCGGagaagacGGCGGggGAGaCGGGGaagaCGGg -3' miRNA: 3'- -GCUGCC-------CUGCCuuCUC-GUCCCg---GUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 108358 | 0.7 | 0.618145 |
Target: 5'- -aGCGGGgaGCGGAGGAGgacCGGGcGCCGGa -3' miRNA: 3'- gcUGCCC--UGCCUUCUC---GUCC-CGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 110614 | 0.67 | 0.774741 |
Target: 5'- -aGCGGaGCGGGAGccgcggcgccgcggcGGCGGGGUCGGg -3' miRNA: 3'- gcUGCCcUGCCUUC---------------UCGUCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 112358 | 0.68 | 0.68657 |
Target: 5'- gCGGCGGGGCGGGgagcugcuGGAacucggcacGCAGGGCg--- -3' miRNA: 3'- -GCUGCCCUGCCU--------UCU---------CGUCCCGguca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 115978 | 0.69 | 0.627947 |
Target: 5'- -aGCGGGACGG-GGAGCGGcGCCGc- -3' miRNA: 3'- gcUGCCCUGCCuUCUCGUCcCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 116133 | 0.68 | 0.734348 |
Target: 5'- gCGGCGGcGGCGGcGGcGGcCAGGGCCu-- -3' miRNA: 3'- -GCUGCC-CUGCCuUC-UC-GUCCCGGuca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 116409 | 0.74 | 0.382105 |
Target: 5'- uGGCGGGGCGcGAgcaccAGGGCGcGGGUCAGg -3' miRNA: 3'- gCUGCCCUGC-CU-----UCUCGU-CCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 116445 | 0.69 | 0.676858 |
Target: 5'- cCGACGGuGGCGaugacGAAGAGC--GGCCGGUu -3' miRNA: 3'- -GCUGCC-CUGC-----CUUCUCGucCCGGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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