miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 118327 0.72 0.475577
Target:  5'- gCGACGGGcgGCGaGAAGAGCAGGucGCCc-- -3'
miRNA:   3'- -GCUGCCC--UGC-CUUCUCGUCC--CGGuca -5'
10768 3' -59.7 NC_002794.1 + 120128 0.67 0.780089
Target:  5'- gCGACGGcGACcGggGAc--GGGCCGGUg -3'
miRNA:   3'- -GCUGCC-CUGcCuuCUcguCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 124016 0.68 0.705861
Target:  5'- gGGCGGccGCGGAAGAGaCGGuGGCCGu- -3'
miRNA:   3'- gCUGCCc-UGCCUUCUC-GUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 125737 0.66 0.830885
Target:  5'- aGGCGGaGGCGGGccgcGGGaCGGcGGCCGGc -3'
miRNA:   3'- gCUGCC-CUGCCUu---CUC-GUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 126687 0.67 0.771152
Target:  5'- cCGAaucgGGGAgGGAGGGGCgccgcggacucGGGGCgAGg -3'
miRNA:   3'- -GCUg---CCCUgCCUUCUCG-----------UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 127656 0.67 0.759365
Target:  5'- cCGACGGGGgGGAAaagccggggaccucGAGCccGGUCGGg -3'
miRNA:   3'- -GCUGCCCUgCCUU--------------CUCGucCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 127918 0.66 0.797589
Target:  5'- cCGAgGGGGCGGGGauuCGGGGCguGUc -3'
miRNA:   3'- -GCUgCCCUGCCUUcucGUCCCGguCA- -5'
10768 3' -59.7 NC_002794.1 + 136123 0.68 0.734348
Target:  5'- uGGCGGG-CGaagucGAAGAGgAGGGCgAGg -3'
miRNA:   3'- gCUGCCCuGC-----CUUCUCgUCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 139996 0.67 0.771152
Target:  5'- -cGCGGGACGGugcGGGUGGaGGCCGc- -3'
miRNA:   3'- gcUGCCCUGCCuu-CUCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 140190 0.68 0.734348
Target:  5'- gCGACGGcGuCGucGAGGGGCGacccGGGCCGGa -3'
miRNA:   3'- -GCUGCC-CuGC--CUUCUCGU----CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 142387 0.69 0.646573
Target:  5'- gCGGCGGaGACGGcGGuGCAGGcggcgucggcggcGCCGGg -3'
miRNA:   3'- -GCUGCC-CUGCCuUCuCGUCC-------------CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 143313 0.73 0.435029
Target:  5'- gCGGCGGGAUGGAAGucggucgcgugcucgGGCAgcGGGCuCGGg -3'
miRNA:   3'- -GCUGCCCUGCCUUC---------------UCGU--CCCG-GUCa -5'
10768 3' -59.7 NC_002794.1 + 145560 0.66 0.797589
Target:  5'- cCGACcGGuucGCGGAcgagcgccgacGGAGCGGcGGCCGGc -3'
miRNA:   3'- -GCUGcCC---UGCCU-----------UCUCGUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 146744 0.66 0.806137
Target:  5'- aCGACGGGccGCGGAucGGGGgAGGGacgaUGGUc -3'
miRNA:   3'- -GCUGCCC--UGCCU--UCUCgUCCCg---GUCA- -5'
10768 3' -59.7 NC_002794.1 + 147134 0.69 0.647553
Target:  5'- aCGGCGGuucgaGACGGccccGGGGCcgcgAGGGCCAGc -3'
miRNA:   3'- -GCUGCC-----CUGCCu---UCUCG----UCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 149845 0.67 0.780089
Target:  5'- gGACGaGGACGGGGacGAGgAGcGGCCGc- -3'
miRNA:   3'- gCUGC-CCUGCCUU--CUCgUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 153518 0.66 0.822793
Target:  5'- cCGGCGcuauuGGuCGGGAGAGguGGGCg--- -3'
miRNA:   3'- -GCUGC-----CCuGCCUUCUCguCCCGguca -5'
10768 3' -59.7 NC_002794.1 + 159291 0.7 0.608353
Target:  5'- cCGACGaGGGCGGAGGuGGCAGcuaGCCAu- -3'
miRNA:   3'- -GCUGC-CCUGCCUUC-UCGUCc--CGGUca -5'
10768 3' -59.7 NC_002794.1 + 176585 0.67 0.742761
Target:  5'- aGACGGGAUGugacucacGGAGAGCGGccggcacGGCCAu- -3'
miRNA:   3'- gCUGCCCUGC--------CUUCUCGUC-------CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 178048 0.7 0.598577
Target:  5'- uGACGGGuggagacUGGAAGAGCgAGGGauCCGGg -3'
miRNA:   3'- gCUGCCCu------GCCUUCUCG-UCCC--GGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.