miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 127656 0.67 0.759365
Target:  5'- cCGACGGGGgGGAAaagccggggaccucGAGCccGGUCGGg -3'
miRNA:   3'- -GCUGCCCUgCCUU--------------CUCGucCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 126687 0.67 0.771152
Target:  5'- cCGAaucgGGGAgGGAGGGGCgccgcggacucGGGGCgAGg -3'
miRNA:   3'- -GCUg---CCCUgCCUUCUCG-----------UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 125737 0.66 0.830885
Target:  5'- aGGCGGaGGCGGGccgcGGGaCGGcGGCCGGc -3'
miRNA:   3'- gCUGCC-CUGCCUu---CUC-GUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 124016 0.68 0.705861
Target:  5'- gGGCGGccGCGGAAGAGaCGGuGGCCGu- -3'
miRNA:   3'- gCUGCCc-UGCCUUCUC-GUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 120128 0.67 0.780089
Target:  5'- gCGACGGcGACcGggGAc--GGGCCGGUg -3'
miRNA:   3'- -GCUGCC-CUGcCuuCUcguCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 118327 0.72 0.475577
Target:  5'- gCGACGGGcgGCGaGAAGAGCAGGucGCCc-- -3'
miRNA:   3'- -GCUGCCC--UGC-CUUCUCGUCC--CGGuca -5'
10768 3' -59.7 NC_002794.1 + 116445 0.69 0.676858
Target:  5'- cCGACGGuGGCGaugacGAAGAGC--GGCCGGUu -3'
miRNA:   3'- -GCUGCC-CUGC-----CUUCUCGucCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 116409 0.74 0.382105
Target:  5'- uGGCGGGGCGcGAgcaccAGGGCGcGGGUCAGg -3'
miRNA:   3'- gCUGCCCUGC-CU-----UCUCGU-CCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 116133 0.68 0.734348
Target:  5'- gCGGCGGcGGCGGcGGcGGcCAGGGCCu-- -3'
miRNA:   3'- -GCUGCC-CUGCCuUC-UC-GUCCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 115978 0.69 0.627947
Target:  5'- -aGCGGGACGG-GGAGCGGcGCCGc- -3'
miRNA:   3'- gcUGCCCUGCCuUCUCGUCcCGGUca -5'
10768 3' -59.7 NC_002794.1 + 112358 0.68 0.68657
Target:  5'- gCGGCGGGGCGGGgagcugcuGGAacucggcacGCAGGGCg--- -3'
miRNA:   3'- -GCUGCCCUGCCU--------UCU---------CGUCCCGguca -5'
10768 3' -59.7 NC_002794.1 + 110614 0.67 0.774741
Target:  5'- -aGCGGaGCGGGAGccgcggcgccgcggcGGCGGGGUCGGg -3'
miRNA:   3'- gcUGCCcUGCCUUC---------------UCGUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 108358 0.7 0.618145
Target:  5'- -aGCGGGgaGCGGAGGAGgacCGGGcGCCGGa -3'
miRNA:   3'- gcUGCCC--UGCCUUCUC---GUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 107587 0.69 0.675885
Target:  5'- aCGGCGGagaagacGGCGGggGAGaCGGGGaagaCGGg -3'
miRNA:   3'- -GCUGCC-------CUGCCuuCUC-GUCCCg---GUCa -5'
10768 3' -59.7 NC_002794.1 + 106338 0.69 0.627947
Target:  5'- uCGACGGuucgccgggucGACGGc-GGGCGGGcGCCGGUu -3'
miRNA:   3'- -GCUGCC-----------CUGCCuuCUCGUCC-CGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 101641 0.67 0.780089
Target:  5'- gCGAgCGuGGGCGGgcGGGCGGcGGUUAGc -3'
miRNA:   3'- -GCU-GC-CCUGCCuuCUCGUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 101585 0.71 0.550158
Target:  5'- cCGcCGcGGcCGGggGGGCGGGuGCCGGc -3'
miRNA:   3'- -GCuGC-CCuGCCuuCUCGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 98469 1.06 0.002805
Target:  5'- uCGACGGGACGGAAGAGCAGGGCCAGUu -3'
miRNA:   3'- -GCUGCCCUGCCUUCUCGUCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 96881 0.67 0.788904
Target:  5'- gGACGGuGGCGcuacGGGGCAGGcGUCGGg -3'
miRNA:   3'- gCUGCC-CUGCcu--UCUCGUCC-CGGUCa -5'
10768 3' -59.7 NC_002794.1 + 95820 0.74 0.389285
Target:  5'- gCGGCGGcGGcCGGggGAGCGGcggcggcGGCCGGg -3'
miRNA:   3'- -GCUGCC-CU-GCCuuCUCGUC-------CCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.