miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 95745 0.69 0.676858
Target:  5'- gGACGGGGCuGGuacucgcGGGGCGGcGGCCGc- -3'
miRNA:   3'- gCUGCCCUG-CCu------UCUCGUC-CCGGUca -5'
10768 3' -59.7 NC_002794.1 + 95484 0.66 0.797589
Target:  5'- cCGuACGuuGCGGAAcGAGCucGGCCAGUa -3'
miRNA:   3'- -GC-UGCccUGCCUU-CUCGucCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 95015 0.66 0.797589
Target:  5'- uGAUGGGGCGGcuGuGCGGcaucucGCCGGUg -3'
miRNA:   3'- gCUGCCCUGCCuuCuCGUCc-----CGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 94222 0.8 0.16842
Target:  5'- uGGCGGcGACGGgcGGGC-GGGCCGGUg -3'
miRNA:   3'- gCUGCC-CUGCCuuCUCGuCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 94052 0.69 0.667113
Target:  5'- gCGGCGGuGCGGggGcGGCggGGGGCgAGg -3'
miRNA:   3'- -GCUGCCcUGCCuuC-UCG--UCCCGgUCa -5'
10768 3' -59.7 NC_002794.1 + 92305 0.66 0.797589
Target:  5'- aGGCGGGGCuGGGcgcgGGcGGCGGGGgcCCGGg -3'
miRNA:   3'- gCUGCCCUG-CCU----UC-UCGUCCC--GGUCa -5'
10768 3' -59.7 NC_002794.1 + 87282 0.67 0.762101
Target:  5'- nGGCGGGugGGGguGGGGaagcGGGCCu-- -3'
miRNA:   3'- gCUGCCCugCCU--UCUCgu--CCCGGuca -5'
10768 3' -59.7 NC_002794.1 + 87261 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87240 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87219 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87198 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87177 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87156 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87135 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87114 0.71 0.550158
Target:  5'- nGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 87093 0.71 0.550158
Target:  5'- gGGCGGGugGG-GGuGCAGG-CCGGg -3'
miRNA:   3'- gCUGCCCugCCuUCuCGUCCcGGUCa -5'
10768 3' -59.7 NC_002794.1 + 86549 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86501 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86381 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86333 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.