miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 5' -55.9 NC_002794.1 + 100766 0.66 0.952327
Target:  5'- uGGCCGGUCGcggaguacacgcgccUGCgguucgCggCCGCUUCu- -3'
miRNA:   3'- gCUGGCCAGC---------------ACGa-----GaaGGCGAAGca -5'
10768 5' -55.9 NC_002794.1 + 80452 0.66 0.950734
Target:  5'- cCGGCCcGUCGgcgGCccgcugcccgUCUUCCGCgUCGa -3'
miRNA:   3'- -GCUGGcCAGCa--CG----------AGAAGGCGaAGCa -5'
10768 5' -55.9 NC_002794.1 + 51973 0.66 0.946599
Target:  5'- gGACCGGcaUCGUggcGCUCggCCGCUacCGa -3'
miRNA:   3'- gCUGGCC--AGCA---CGAGaaGGCGAa-GCa -5'
10768 5' -55.9 NC_002794.1 + 180251 0.66 0.946599
Target:  5'- -aACCGGgaCGUGUUg-UCCGCUUCGc -3'
miRNA:   3'- gcUGGCCa-GCACGAgaAGGCGAAGCa -5'
10768 5' -55.9 NC_002794.1 + 117560 0.68 0.899234
Target:  5'- uCGAgCCGGUCGUGCagc-CCGCccgUCGa -3'
miRNA:   3'- -GCU-GGCCAGCACGagaaGGCGa--AGCa -5'
10768 5' -55.9 NC_002794.1 + 46243 0.68 0.892848
Target:  5'- -cGCCGG-CG-GCUCgUCCGCUUCc- -3'
miRNA:   3'- gcUGGCCaGCaCGAGaAGGCGAAGca -5'
10768 5' -55.9 NC_002794.1 + 156719 0.68 0.892848
Target:  5'- cCGAUCGGUCGUuCUCcgCgGCUcgUCGUg -3'
miRNA:   3'- -GCUGGCCAGCAcGAGaaGgCGA--AGCA- -5'
10768 5' -55.9 NC_002794.1 + 148666 0.68 0.886244
Target:  5'- cCGACCGaggagcggauGUaCGUGCUCagCCGCU-CGUg -3'
miRNA:   3'- -GCUGGC----------CA-GCACGAGaaGGCGAaGCA- -5'
10768 5' -55.9 NC_002794.1 + 2101 0.69 0.850111
Target:  5'- gCGACCGGggCGUGUUCUaucuacggUCCGCg---- -3'
miRNA:   3'- -GCUGGCCa-GCACGAGA--------AGGCGaagca -5'
10768 5' -55.9 NC_002794.1 + 150980 0.69 0.826132
Target:  5'- uCGGCCGGUCuGgacgacgaGCUCgcCCGCUUCa- -3'
miRNA:   3'- -GCUGGCCAG-Ca-------CGAGaaGGCGAAGca -5'
10768 5' -55.9 NC_002794.1 + 2215 0.69 0.826132
Target:  5'- aCGACCGGggCGUGUUCUaucuacggUCCGCg---- -3'
miRNA:   3'- -GCUGGCCa-GCACGAGA--------AGGCGaagca -5'
10768 5' -55.9 NC_002794.1 + 98506 1.08 0.004964
Target:  5'- cCGACCGGUCGUGCUCUUCCGCUUCGUg -3'
miRNA:   3'- -GCUGGCCAGCACGAGAAGGCGAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.