Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10768 | 5' | -55.9 | NC_002794.1 | + | 100766 | 0.66 | 0.952327 |
Target: 5'- uGGCCGGUCGcggaguacacgcgccUGCgguucgCggCCGCUUCu- -3' miRNA: 3'- gCUGGCCAGC---------------ACGa-----GaaGGCGAAGca -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 98506 | 1.08 | 0.004964 |
Target: 5'- cCGACCGGUCGUGCUCUUCCGCUUCGUg -3' miRNA: 3'- -GCUGGCCAGCACGAGAAGGCGAAGCA- -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 2101 | 0.69 | 0.850111 |
Target: 5'- gCGACCGGggCGUGUUCUaucuacggUCCGCg---- -3' miRNA: 3'- -GCUGGCCa-GCACGAGA--------AGGCGaagca -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 150980 | 0.69 | 0.826132 |
Target: 5'- uCGGCCGGUCuGgacgacgaGCUCgcCCGCUUCa- -3' miRNA: 3'- -GCUGGCCAG-Ca-------CGAGaaGGCGAAGca -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 156719 | 0.68 | 0.892848 |
Target: 5'- cCGAUCGGUCGUuCUCcgCgGCUcgUCGUg -3' miRNA: 3'- -GCUGGCCAGCAcGAGaaGgCGA--AGCA- -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 148666 | 0.68 | 0.886244 |
Target: 5'- cCGACCGaggagcggauGUaCGUGCUCagCCGCU-CGUg -3' miRNA: 3'- -GCUGGC----------CA-GCACGAGaaGGCGAaGCA- -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 46243 | 0.68 | 0.892848 |
Target: 5'- -cGCCGG-CG-GCUCgUCCGCUUCc- -3' miRNA: 3'- gcUGGCCaGCaCGAGaAGGCGAAGca -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 117560 | 0.68 | 0.899234 |
Target: 5'- uCGAgCCGGUCGUGCagc-CCGCccgUCGa -3' miRNA: 3'- -GCU-GGCCAGCACGagaaGGCGa--AGCa -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 180251 | 0.66 | 0.946599 |
Target: 5'- -aACCGGgaCGUGUUg-UCCGCUUCGc -3' miRNA: 3'- gcUGGCCa-GCACGAgaAGGCGAAGCa -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 51973 | 0.66 | 0.946599 |
Target: 5'- gGACCGGcaUCGUggcGCUCggCCGCUacCGa -3' miRNA: 3'- gCUGGCC--AGCA---CGAGaaGGCGAa-GCa -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 80452 | 0.66 | 0.950734 |
Target: 5'- cCGGCCcGUCGgcgGCccgcugcccgUCUUCCGCgUCGa -3' miRNA: 3'- -GCUGGcCAGCa--CG----------AGAAGGCGaAGCa -5' |
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10768 | 5' | -55.9 | NC_002794.1 | + | 2215 | 0.69 | 0.826132 |
Target: 5'- aCGACCGGggCGUGUUCUaucuacggUCCGCg---- -3' miRNA: 3'- -GCUGGCCa-GCACGAGA--------AGGCGaagca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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