miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 44532 0.66 0.999918
Target:  5'- --cCGcGAGCGCGC--CGUCGUcgUCGCc -3'
miRNA:   3'- cuuGC-CUUGUGCGuuGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 41182 0.66 0.999918
Target:  5'- -cGCGGAgGC-CG-AGCGUCGUcgUCACg -3'
miRNA:   3'- cuUGCCU-UGuGCgUUGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 63480 0.66 0.999918
Target:  5'- cGGCGGccgccgucgacGACGcCGCGGCGUCGUcgucCGCg -3'
miRNA:   3'- cUUGCC-----------UUGU-GCGUUGCAGCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 97616 0.66 0.999918
Target:  5'- cAACGGAcACACGUuucacgagaaccGGCGcaaGUUUCACg -3'
miRNA:   3'- cUUGCCU-UGUGCG------------UUGCag-CAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 177550 0.66 0.999903
Target:  5'- gGAACGGAAUAaaaagggacgagcuuCGCGACGcCGUgacUCGa -3'
miRNA:   3'- -CUUGCCUUGU---------------GCGUUGCaGCAa--AGUg -5'
10769 3' -48.1 NC_002794.1 + 178425 0.66 0.999892
Target:  5'- -cACGGAcCGCGCGACGggCGgugaCGCc -3'
miRNA:   3'- cuUGCCUuGUGCGUUGCa-GCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 118270 0.66 0.999892
Target:  5'- gGGGCGGcGGCGC-CGGCGUCGgggacCGCg -3'
miRNA:   3'- -CUUGCC-UUGUGcGUUGCAGCaaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 34734 0.66 0.999892
Target:  5'- cGGGCGGccgcagAGCGCGCGACGgcgCGgugggaCGCg -3'
miRNA:   3'- -CUUGCC------UUGUGCGUUGCa--GCaaa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 191841 0.66 0.99986
Target:  5'- cGACGGAGaCGCGCAAUcgugGUCGUg---- -3'
miRNA:   3'- cUUGCCUU-GUGCGUUG----CAGCAaagug -5'
10769 3' -48.1 NC_002794.1 + 84346 0.66 0.99982
Target:  5'- cGAACGGGaaaACGC-CGACGUCGa--CGCc -3'
miRNA:   3'- -CUUGCCU---UGUGcGUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 92278 0.66 0.99982
Target:  5'- cGGGCGaGGCGCGCAAgGUCGg--CGa -3'
miRNA:   3'- -CUUGCcUUGUGCGUUgCAGCaaaGUg -5'
10769 3' -48.1 NC_002794.1 + 3726 0.66 0.99982
Target:  5'- gGAACGGuugggacaucgcGAC-CGCAACG-CGcgUCACg -3'
miRNA:   3'- -CUUGCC------------UUGuGCGUUGCaGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 89717 0.66 0.99982
Target:  5'- -cGCGGugccgaucCGCGCGGCGUCGguccuuggggaUUCGCg -3'
miRNA:   3'- cuUGCCuu------GUGCGUUGCAGCa----------AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 110248 0.66 0.99982
Target:  5'- cGGCGGAGguuuccCGCGCGGCGUCGc----- -3'
miRNA:   3'- cUUGCCUU------GUGCGUUGCAGCaaagug -5'
10769 3' -48.1 NC_002794.1 + 98438 0.66 0.999807
Target:  5'- cAACGGGACAUGCGuaaguucgagacgaGCGUCGa----- -3'
miRNA:   3'- cUUGCCUUGUGCGU--------------UGCAGCaaagug -5'
10769 3' -48.1 NC_002794.1 + 182190 0.67 0.999709
Target:  5'- uAACGGGGCcucgGCGcCGGCGUCGcgcCACg -3'
miRNA:   3'- cUUGCCUUG----UGC-GUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 14470 0.67 0.999633
Target:  5'- cGAGCGG--CGCGCcGCGcUCGcugUUCGCg -3'
miRNA:   3'- -CUUGCCuuGUGCGuUGC-AGCa--AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 111729 0.67 0.999633
Target:  5'- cGAGCGGGcgaACGCGCu-CGUCGagcuggCGCc -3'
miRNA:   3'- -CUUGCCU---UGUGCGuuGCAGCaaa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 158176 0.67 0.999633
Target:  5'- uGAGCGGAAC-CGCGAUgggugaggggGUCGgaaCACc -3'
miRNA:   3'- -CUUGCCUUGuGCGUUG----------CAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 59195 0.67 0.999633
Target:  5'- uGGCGGucGACGCGC-ACGUCGgcgUCuCg -3'
miRNA:   3'- cUUGCC--UUGUGCGuUGCAGCaa-AGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.