miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 97829 1.11 0.017403
Target:  5'- cGAACGGAACACGCAACGUCGUUUCACu -3'
miRNA:   3'- -CUUGCCUUGUGCGUUGCAGCAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 105146 0.77 0.846179
Target:  5'- -cGCGGAGCACGUAGCGgaaGUUgaugCGCg -3'
miRNA:   3'- cuUGCCUUGUGCGUUGCag-CAAa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 193081 0.76 0.877632
Target:  5'- -cGCGGGACAgccgcaGCAGCGUCGUgaUCACc -3'
miRNA:   3'- cuUGCCUUGUg-----CGUUGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 142160 0.74 0.956931
Target:  5'- cGGCGGuAGCACcgGCAGCGUCGgcagCGCg -3'
miRNA:   3'- cUUGCC-UUGUG--CGUUGCAGCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 187822 0.73 0.970674
Target:  5'- uGAGCGGAGCGCGCucgGC-UCGg--CGCg -3'
miRNA:   3'- -CUUGCCUUGUGCGu--UGcAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 142397 0.73 0.970674
Target:  5'- cGGCGGuGCAgGCGGCGUCGgcggCGCc -3'
miRNA:   3'- cUUGCCuUGUgCGUUGCAGCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 91052 0.72 0.976215
Target:  5'- uGGACGGGGCGCGCGuCGUCaug-UACg -3'
miRNA:   3'- -CUUGCCUUGUGCGUuGCAGcaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 61900 0.72 0.976215
Target:  5'- cGAGCGcggcGAGCGCaGCGACGUCG--UCACc -3'
miRNA:   3'- -CUUGC----CUUGUG-CGUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 68915 0.72 0.978678
Target:  5'- -cGCGGGGCuCGCGGCGUCcucgUCGCc -3'
miRNA:   3'- cuUGCCUUGuGCGUUGCAGcaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 99587 0.72 0.980948
Target:  5'- -uGCGGAGgGCGCGGCGgCGgcgCGCg -3'
miRNA:   3'- cuUGCCUUgUGCGUUGCaGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 63795 0.72 0.983031
Target:  5'- -uGCGGAAC-CGCGACGaCGUcccgcaccgacUUCGCg -3'
miRNA:   3'- cuUGCCUUGuGCGUUGCaGCA-----------AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 141155 0.71 0.984938
Target:  5'- cGGCGGAuccCGCGaCGACGUCG--UCGCg -3'
miRNA:   3'- cUUGCCUu--GUGC-GUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 65785 0.71 0.986677
Target:  5'- cGAGCGGAucACACGaggcguugaCGACGUcCGUUUCGa -3'
miRNA:   3'- -CUUGCCU--UGUGC---------GUUGCA-GCAAAGUg -5'
10769 3' -48.1 NC_002794.1 + 139920 0.71 0.986677
Target:  5'- --uCGGAcgGCACGCAGCuGUCGUUgacgUGCa -3'
miRNA:   3'- cuuGCCU--UGUGCGUUG-CAGCAAa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 152225 0.71 0.99098
Target:  5'- cGGACGucGCGCGCcACGUCGcg-CGCa -3'
miRNA:   3'- -CUUGCcuUGUGCGuUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 106316 0.7 0.99214
Target:  5'- cGAGCGcGAcGCGCGCGACGggUCGacggUUCGCc -3'
miRNA:   3'- -CUUGC-CU-UGUGCGUUGC--AGCa---AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 107223 0.7 0.99214
Target:  5'- --cCGGGcgGCGCGCGACGggggCGgcgUCGCg -3'
miRNA:   3'- cuuGCCU--UGUGCGUUGCa---GCaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 49019 0.7 0.993178
Target:  5'- -cGCGGcGGC-CGCGGCGUCGUccggCGCg -3'
miRNA:   3'- cuUGCC-UUGuGCGUUGCAGCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 189856 0.7 0.995652
Target:  5'- -cGCGGAGC-CGuCGGCGUCG--UCGCc -3'
miRNA:   3'- cuUGCCUUGuGC-GUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 129049 0.7 0.995652
Target:  5'- -uGCGGucguGGCGCGCGACGgUGUgUCGCg -3'
miRNA:   3'- cuUGCC----UUGUGCGUUGCaGCAaAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.