miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 25129 0.67 0.999633
Target:  5'- cGAGCGGGGCACGCGcgcACGguaGgccaGCg -3'
miRNA:   3'- -CUUGCCUUGUGCGU---UGCag-CaaagUG- -5'
10769 3' -48.1 NC_002794.1 + 38485 0.67 0.999428
Target:  5'- uGGGCGGAGgaaGCGCGGCGgCGccggUCGCc -3'
miRNA:   3'- -CUUGCCUUg--UGCGUUGCaGCaa--AGUG- -5'
10769 3' -48.1 NC_002794.1 + 4808 0.67 0.999293
Target:  5'- -uACGGAGCGCGUcGCGUuCGUcgaACg -3'
miRNA:   3'- cuUGCCUUGUGCGuUGCA-GCAaagUG- -5'
10769 3' -48.1 NC_002794.1 + 114404 0.67 0.999293
Target:  5'- uGAUGGAGCA-GCG-CGUCGUaaCACa -3'
miRNA:   3'- cUUGCCUUGUgCGUuGCAGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 116076 0.67 0.999293
Target:  5'- -cGCGGAGCgcucgGCGCGGCgGUCG--UCGCc -3'
miRNA:   3'- cuUGCCUUG-----UGCGUUG-CAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 183076 0.67 0.999293
Target:  5'- uGGACgGGAACGagaGCGAgGUCG--UCACg -3'
miRNA:   3'- -CUUG-CCUUGUg--CGUUgCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 126231 0.67 0.999293
Target:  5'- aGAuCGGGAC-CGUGGCGaUCGUggCGCg -3'
miRNA:   3'- -CUuGCCUUGuGCGUUGC-AGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 187337 0.68 0.999132
Target:  5'- --cCGGAGCA-GCAGCccGUCGUUcgcggUCACg -3'
miRNA:   3'- cuuGCCUUGUgCGUUG--CAGCAA-----AGUG- -5'
10769 3' -48.1 NC_002794.1 + 14644 0.68 0.999114
Target:  5'- -cACGGAgacgccgGCGcCGCGGCGUCGguccgacUCGCg -3'
miRNA:   3'- cuUGCCU-------UGU-GCGUUGCAGCaa-----AGUG- -5'
10769 3' -48.1 NC_002794.1 + 122833 0.68 0.998939
Target:  5'- cGAGCGGGagcgGCACGCGAaGUCG---CACu -3'
miRNA:   3'- -CUUGCCU----UGUGCGUUgCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 124183 0.68 0.998711
Target:  5'- gGGAgGGGACugGUuuCGUCcggucgcgGUUUCGCg -3'
miRNA:   3'- -CUUgCCUUGugCGuuGCAG--------CAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 184031 0.68 0.998711
Target:  5'- -cACGGcaccGCGCGCAGCG-CGcggUCGCg -3'
miRNA:   3'- cuUGCCu---UGUGCGUUGCaGCaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 145418 0.68 0.998443
Target:  5'- aAGCGcGGCGCGCcgcCGUCGgcUCACg -3'
miRNA:   3'- cUUGCcUUGUGCGuu-GCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 130523 0.69 0.998025
Target:  5'- cGAGCGGGcugACcgugacgauuuccgACGCGGCGUCGccgCGCa -3'
miRNA:   3'- -CUUGCCU---UG--------------UGCGUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 142515 0.69 0.997763
Target:  5'- gGAACGGAACGuCGUcuUGUCGUcgUGCg -3'
miRNA:   3'- -CUUGCCUUGU-GCGuuGCAGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 117660 0.69 0.996852
Target:  5'- aGAGCGccACGCGCGGCGgcgCGUacugCACg -3'
miRNA:   3'- -CUUGCcuUGUGCGUUGCa--GCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 130850 0.69 0.996852
Target:  5'- gGAACGGAGCuACGUGACGcaguacgCGggUCAg -3'
miRNA:   3'- -CUUGCCUUG-UGCGUUGCa------GCaaAGUg -5'
10769 3' -48.1 NC_002794.1 + 179298 0.69 0.996852
Target:  5'- cGAGCGGAACGCGgcgugcauguuCGGCGUUuuaUUCGCu -3'
miRNA:   3'- -CUUGCCUUGUGC-----------GUUGCAGca-AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 104012 0.69 0.996852
Target:  5'- cGGCGGAACGCcuccGCAGCGagCGU-UCGCc -3'
miRNA:   3'- cUUGCCUUGUG----CGUUGCa-GCAaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 129049 0.7 0.995652
Target:  5'- -uGCGGucguGGCGCGCGACGgUGUgUCGCg -3'
miRNA:   3'- cuUGCC----UUGUGCGUUGCaGCAaAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.