miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 3726 0.66 0.99982
Target:  5'- gGAACGGuugggacaucgcGAC-CGCAACG-CGcgUCACg -3'
miRNA:   3'- -CUUGCC------------UUGuGCGUUGCaGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 4808 0.67 0.999293
Target:  5'- -uACGGAGCGCGUcGCGUuCGUcgaACg -3'
miRNA:   3'- cuUGCCUUGUGCGuUGCA-GCAaagUG- -5'
10769 3' -48.1 NC_002794.1 + 14470 0.67 0.999633
Target:  5'- cGAGCGG--CGCGCcGCGcUCGcugUUCGCg -3'
miRNA:   3'- -CUUGCCuuGUGCGuUGC-AGCa--AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 14644 0.68 0.999114
Target:  5'- -cACGGAgacgccgGCGcCGCGGCGUCGguccgacUCGCg -3'
miRNA:   3'- cuUGCCU-------UGU-GCGUUGCAGCaa-----AGUG- -5'
10769 3' -48.1 NC_002794.1 + 25129 0.67 0.999633
Target:  5'- cGAGCGGGGCACGCGcgcACGguaGgccaGCg -3'
miRNA:   3'- -CUUGCCUUGUGCGU---UGCag-CaaagUG- -5'
10769 3' -48.1 NC_002794.1 + 34734 0.66 0.999892
Target:  5'- cGGGCGGccgcagAGCGCGCGACGgcgCGgugggaCGCg -3'
miRNA:   3'- -CUUGCC------UUGUGCGUUGCa--GCaaa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 38485 0.67 0.999428
Target:  5'- uGGGCGGAGgaaGCGCGGCGgCGccggUCGCc -3'
miRNA:   3'- -CUUGCCUUg--UGCGUUGCaGCaa--AGUG- -5'
10769 3' -48.1 NC_002794.1 + 41182 0.66 0.999918
Target:  5'- -cGCGGAgGC-CG-AGCGUCGUcgUCACg -3'
miRNA:   3'- cuUGCCU-UGuGCgUUGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 44532 0.66 0.999918
Target:  5'- --cCGcGAGCGCGC--CGUCGUcgUCGCc -3'
miRNA:   3'- cuuGC-CUUGUGCGuuGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 49019 0.7 0.993178
Target:  5'- -cGCGGcGGC-CGCGGCGUCGUccggCGCg -3'
miRNA:   3'- cuUGCC-UUGuGCGUUGCAGCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 59195 0.67 0.999633
Target:  5'- uGGCGGucGACGCGC-ACGUCGgcgUCuCg -3'
miRNA:   3'- cUUGCC--UUGUGCGuUGCAGCaa-AGuG- -5'
10769 3' -48.1 NC_002794.1 + 61900 0.72 0.976215
Target:  5'- cGAGCGcggcGAGCGCaGCGACGUCG--UCACc -3'
miRNA:   3'- -CUUGC----CUUGUG-CGUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 63480 0.66 0.999918
Target:  5'- cGGCGGccgccgucgacGACGcCGCGGCGUCGUcgucCGCg -3'
miRNA:   3'- cUUGCC-----------UUGU-GCGUUGCAGCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 63795 0.72 0.983031
Target:  5'- -uGCGGAAC-CGCGACGaCGUcccgcaccgacUUCGCg -3'
miRNA:   3'- cuUGCCUUGuGCGUUGCaGCA-----------AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 65785 0.71 0.986677
Target:  5'- cGAGCGGAucACACGaggcguugaCGACGUcCGUUUCGa -3'
miRNA:   3'- -CUUGCCU--UGUGC---------GUUGCA-GCAAAGUg -5'
10769 3' -48.1 NC_002794.1 + 68915 0.72 0.978678
Target:  5'- -cGCGGGGCuCGCGGCGUCcucgUCGCc -3'
miRNA:   3'- cuUGCCUUGuGCGUUGCAGcaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 84346 0.66 0.99982
Target:  5'- cGAACGGGaaaACGC-CGACGUCGa--CGCc -3'
miRNA:   3'- -CUUGCCU---UGUGcGUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 89717 0.66 0.99982
Target:  5'- -cGCGGugccgaucCGCGCGGCGUCGguccuuggggaUUCGCg -3'
miRNA:   3'- cuUGCCuu------GUGCGUUGCAGCa----------AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 91052 0.72 0.976215
Target:  5'- uGGACGGGGCGCGCGuCGUCaug-UACg -3'
miRNA:   3'- -CUUGCCUUGUGCGUuGCAGcaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 92278 0.66 0.99982
Target:  5'- cGGGCGaGGCGCGCAAgGUCGg--CGa -3'
miRNA:   3'- -CUUGCcUUGUGCGUUgCAGCaaaGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.