miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 97616 0.66 0.999918
Target:  5'- cAACGGAcACACGUuucacgagaaccGGCGcaaGUUUCACg -3'
miRNA:   3'- cUUGCCU-UGUGCG------------UUGCag-CAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 97829 1.11 0.017403
Target:  5'- cGAACGGAACACGCAACGUCGUUUCACu -3'
miRNA:   3'- -CUUGCCUUGUGCGUUGCAGCAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 98438 0.66 0.999807
Target:  5'- cAACGGGACAUGCGuaaguucgagacgaGCGUCGa----- -3'
miRNA:   3'- cUUGCCUUGUGCGU--------------UGCAGCaaagug -5'
10769 3' -48.1 NC_002794.1 + 99587 0.72 0.980948
Target:  5'- -uGCGGAGgGCGCGGCGgCGgcgCGCg -3'
miRNA:   3'- cuUGCCUUgUGCGUUGCaGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 104012 0.69 0.996852
Target:  5'- cGGCGGAACGCcuccGCAGCGagCGU-UCGCc -3'
miRNA:   3'- cUUGCCUUGUG----CGUUGCa-GCAaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 105146 0.77 0.846179
Target:  5'- -cGCGGAGCACGUAGCGgaaGUUgaugCGCg -3'
miRNA:   3'- cuUGCCUUGUGCGUUGCag-CAAa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 106316 0.7 0.99214
Target:  5'- cGAGCGcGAcGCGCGCGACGggUCGacggUUCGCc -3'
miRNA:   3'- -CUUGC-CU-UGUGCGUUGC--AGCa---AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 107223 0.7 0.99214
Target:  5'- --cCGGGcgGCGCGCGACGggggCGgcgUCGCg -3'
miRNA:   3'- cuuGCCU--UGUGCGUUGCa---GCaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 110248 0.66 0.99982
Target:  5'- cGGCGGAGguuuccCGCGCGGCGUCGc----- -3'
miRNA:   3'- cUUGCCUU------GUGCGUUGCAGCaaagug -5'
10769 3' -48.1 NC_002794.1 + 111729 0.67 0.999633
Target:  5'- cGAGCGGGcgaACGCGCu-CGUCGagcuggCGCc -3'
miRNA:   3'- -CUUGCCU---UGUGCGuuGCAGCaaa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 114404 0.67 0.999293
Target:  5'- uGAUGGAGCA-GCG-CGUCGUaaCACa -3'
miRNA:   3'- cUUGCCUUGUgCGUuGCAGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 116076 0.67 0.999293
Target:  5'- -cGCGGAGCgcucgGCGCGGCgGUCG--UCGCc -3'
miRNA:   3'- cuUGCCUUG-----UGCGUUG-CAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 117660 0.69 0.996852
Target:  5'- aGAGCGccACGCGCGGCGgcgCGUacugCACg -3'
miRNA:   3'- -CUUGCcuUGUGCGUUGCa--GCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 118270 0.66 0.999892
Target:  5'- gGGGCGGcGGCGC-CGGCGUCGgggacCGCg -3'
miRNA:   3'- -CUUGCC-UUGUGcGUUGCAGCaaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 122833 0.68 0.998939
Target:  5'- cGAGCGGGagcgGCACGCGAaGUCG---CACu -3'
miRNA:   3'- -CUUGCCU----UGUGCGUUgCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 124183 0.68 0.998711
Target:  5'- gGGAgGGGACugGUuuCGUCcggucgcgGUUUCGCg -3'
miRNA:   3'- -CUUgCCUUGugCGuuGCAG--------CAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 126231 0.67 0.999293
Target:  5'- aGAuCGGGAC-CGUGGCGaUCGUggCGCg -3'
miRNA:   3'- -CUuGCCUUGuGCGUUGC-AGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 129049 0.7 0.995652
Target:  5'- -uGCGGucguGGCGCGCGACGgUGUgUCGCg -3'
miRNA:   3'- cuUGCC----UUGUGCGUUGCaGCAaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 130523 0.69 0.998025
Target:  5'- cGAGCGGGcugACcgugacgauuuccgACGCGGCGUCGccgCGCa -3'
miRNA:   3'- -CUUGCCU---UG--------------UGCGUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 130850 0.69 0.996852
Target:  5'- gGAACGGAGCuACGUGACGcaguacgCGggUCAg -3'
miRNA:   3'- -CUUGCCUUG-UGCGUUGCa------GCaaAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.