miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 193081 0.76 0.877632
Target:  5'- -cGCGGGACAgccgcaGCAGCGUCGUgaUCACc -3'
miRNA:   3'- cuUGCCUUGUg-----CGUUGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 191841 0.66 0.99986
Target:  5'- cGACGGAGaCGCGCAAUcgugGUCGUg---- -3'
miRNA:   3'- cUUGCCUU-GUGCGUUG----CAGCAaagug -5'
10769 3' -48.1 NC_002794.1 + 189856 0.7 0.995652
Target:  5'- -cGCGGAGC-CGuCGGCGUCG--UCGCc -3'
miRNA:   3'- cuUGCCUUGuGC-GUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 187822 0.73 0.970674
Target:  5'- uGAGCGGAGCGCGCucgGC-UCGg--CGCg -3'
miRNA:   3'- -CUUGCCUUGUGCGu--UGcAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 187337 0.68 0.999132
Target:  5'- --cCGGAGCA-GCAGCccGUCGUUcgcggUCACg -3'
miRNA:   3'- cuuGCCUUGUgCGUUG--CAGCAA-----AGUG- -5'
10769 3' -48.1 NC_002794.1 + 184031 0.68 0.998711
Target:  5'- -cACGGcaccGCGCGCAGCG-CGcggUCGCg -3'
miRNA:   3'- cuUGCCu---UGUGCGUUGCaGCaa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 183076 0.67 0.999293
Target:  5'- uGGACgGGAACGagaGCGAgGUCG--UCACg -3'
miRNA:   3'- -CUUG-CCUUGUg--CGUUgCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 182190 0.67 0.999709
Target:  5'- uAACGGGGCcucgGCGcCGGCGUCGcgcCACg -3'
miRNA:   3'- cUUGCCUUG----UGC-GUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 179298 0.69 0.996852
Target:  5'- cGAGCGGAACGCGgcgugcauguuCGGCGUUuuaUUCGCu -3'
miRNA:   3'- -CUUGCCUUGUGC-----------GUUGCAGca-AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 178425 0.66 0.999892
Target:  5'- -cACGGAcCGCGCGACGggCGgugaCGCc -3'
miRNA:   3'- cuUGCCUuGUGCGUUGCa-GCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 177550 0.66 0.999903
Target:  5'- gGAACGGAAUAaaaagggacgagcuuCGCGACGcCGUgacUCGa -3'
miRNA:   3'- -CUUGCCUUGU---------------GCGUUGCaGCAa--AGUg -5'
10769 3' -48.1 NC_002794.1 + 158176 0.67 0.999633
Target:  5'- uGAGCGGAAC-CGCGAUgggugaggggGUCGgaaCACc -3'
miRNA:   3'- -CUUGCCUUGuGCGUUG----------CAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 152225 0.71 0.99098
Target:  5'- cGGACGucGCGCGCcACGUCGcg-CGCa -3'
miRNA:   3'- -CUUGCcuUGUGCGuUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 145418 0.68 0.998443
Target:  5'- aAGCGcGGCGCGCcgcCGUCGgcUCACg -3'
miRNA:   3'- cUUGCcUUGUGCGuu-GCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 142515 0.69 0.997763
Target:  5'- gGAACGGAACGuCGUcuUGUCGUcgUGCg -3'
miRNA:   3'- -CUUGCCUUGU-GCGuuGCAGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 142397 0.73 0.970674
Target:  5'- cGGCGGuGCAgGCGGCGUCGgcggCGCc -3'
miRNA:   3'- cUUGCCuUGUgCGUUGCAGCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 142160 0.74 0.956931
Target:  5'- cGGCGGuAGCACcgGCAGCGUCGgcagCGCg -3'
miRNA:   3'- cUUGCC-UUGUG--CGUUGCAGCaaa-GUG- -5'
10769 3' -48.1 NC_002794.1 + 141155 0.71 0.984938
Target:  5'- cGGCGGAuccCGCGaCGACGUCG--UCGCg -3'
miRNA:   3'- cUUGCCUu--GUGC-GUUGCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 139920 0.71 0.986677
Target:  5'- --uCGGAcgGCACGCAGCuGUCGUUgacgUGCa -3'
miRNA:   3'- cuuGCCU--UGUGCGUUG-CAGCAAa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 130850 0.69 0.996852
Target:  5'- gGAACGGAGCuACGUGACGcaguacgCGggUCAg -3'
miRNA:   3'- -CUUGCCUUG-UGCGUUGCa------GCaaAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.