miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 3' -48.1 NC_002794.1 + 97616 0.66 0.999918
Target:  5'- cAACGGAcACACGUuucacgagaaccGGCGcaaGUUUCACg -3'
miRNA:   3'- cUUGCCU-UGUGCG------------UUGCag-CAAAGUG- -5'
10769 3' -48.1 NC_002794.1 + 63480 0.66 0.999918
Target:  5'- cGGCGGccgccgucgacGACGcCGCGGCGUCGUcgucCGCg -3'
miRNA:   3'- cUUGCC-----------UUGU-GCGUUGCAGCAaa--GUG- -5'
10769 3' -48.1 NC_002794.1 + 41182 0.66 0.999918
Target:  5'- -cGCGGAgGC-CG-AGCGUCGUcgUCACg -3'
miRNA:   3'- cuUGCCU-UGuGCgUUGCAGCAa-AGUG- -5'
10769 3' -48.1 NC_002794.1 + 84346 0.66 0.99982
Target:  5'- cGAACGGGaaaACGC-CGACGUCGa--CGCc -3'
miRNA:   3'- -CUUGCCU---UGUGcGUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 14470 0.67 0.999633
Target:  5'- cGAGCGG--CGCGCcGCGcUCGcugUUCGCg -3'
miRNA:   3'- -CUUGCCuuGUGCGuUGC-AGCa--AAGUG- -5'
10769 3' -48.1 NC_002794.1 + 182190 0.67 0.999709
Target:  5'- uAACGGGGCcucgGCGcCGGCGUCGcgcCACg -3'
miRNA:   3'- cUUGCCUUG----UGC-GUUGCAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 187337 0.68 0.999132
Target:  5'- --cCGGAGCA-GCAGCccGUCGUUcgcggUCACg -3'
miRNA:   3'- cuuGCCUUGUgCGUUG--CAGCAA-----AGUG- -5'
10769 3' -48.1 NC_002794.1 + 4808 0.67 0.999293
Target:  5'- -uACGGAGCGCGUcGCGUuCGUcgaACg -3'
miRNA:   3'- cuUGCCUUGUGCGuUGCA-GCAaagUG- -5'
10769 3' -48.1 NC_002794.1 + 114404 0.67 0.999293
Target:  5'- uGAUGGAGCA-GCG-CGUCGUaaCACa -3'
miRNA:   3'- cUUGCCUUGUgCGUuGCAGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 116076 0.67 0.999293
Target:  5'- -cGCGGAGCgcucgGCGCGGCgGUCG--UCGCc -3'
miRNA:   3'- cuUGCCUUG-----UGCGUUG-CAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 183076 0.67 0.999293
Target:  5'- uGGACgGGAACGagaGCGAgGUCG--UCACg -3'
miRNA:   3'- -CUUG-CCUUGUg--CGUUgCAGCaaAGUG- -5'
10769 3' -48.1 NC_002794.1 + 126231 0.67 0.999293
Target:  5'- aGAuCGGGAC-CGUGGCGaUCGUggCGCg -3'
miRNA:   3'- -CUuGCCUUGuGCGUUGC-AGCAaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 25129 0.67 0.999633
Target:  5'- cGAGCGGGGCACGCGcgcACGguaGgccaGCg -3'
miRNA:   3'- -CUUGCCUUGUGCGU---UGCag-CaaagUG- -5'
10769 3' -48.1 NC_002794.1 + 38485 0.67 0.999428
Target:  5'- uGGGCGGAGgaaGCGCGGCGgCGccggUCGCc -3'
miRNA:   3'- -CUUGCCUUg--UGCGUUGCaGCaa--AGUG- -5'
10769 3' -48.1 NC_002794.1 + 59195 0.67 0.999633
Target:  5'- uGGCGGucGACGCGC-ACGUCGgcgUCuCg -3'
miRNA:   3'- cUUGCC--UUGUGCGuUGCAGCaa-AGuG- -5'
10769 3' -48.1 NC_002794.1 + 158176 0.67 0.999633
Target:  5'- uGAGCGGAAC-CGCGAUgggugaggggGUCGgaaCACc -3'
miRNA:   3'- -CUUGCCUUGuGCGUUG----------CAGCaaaGUG- -5'
10769 3' -48.1 NC_002794.1 + 111729 0.67 0.999633
Target:  5'- cGAGCGGGcgaACGCGCu-CGUCGagcuggCGCc -3'
miRNA:   3'- -CUUGCCU---UGUGCGuuGCAGCaaa---GUG- -5'
10769 3' -48.1 NC_002794.1 + 98438 0.66 0.999807
Target:  5'- cAACGGGACAUGCGuaaguucgagacgaGCGUCGa----- -3'
miRNA:   3'- cUUGCCUUGUGCGU--------------UGCAGCaaagug -5'
10769 3' -48.1 NC_002794.1 + 44532 0.66 0.999918
Target:  5'- --cCGcGAGCGCGC--CGUCGUcgUCGCc -3'
miRNA:   3'- cuuGC-CUUGUGCGuuGCAGCAa-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.