miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 107219 0.66 0.988524
Target:  5'- gCCGCcGGgcGGCGcGCGACGggggcggCGUCGc -3'
miRNA:   3'- -GGCGcCUaaCUGC-CGCUGCaa-----GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 90700 0.66 0.988524
Target:  5'- cCCGCGGcagGACGaaugguGCGACGUgcUCG-CGg -3'
miRNA:   3'- -GGCGCCuaaCUGC------CGCUGCA--AGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 52778 0.66 0.988524
Target:  5'- gCCGCGGGaucgUGACGcuCGAgcCGcUCGUCGg -3'
miRNA:   3'- -GGCGCCUa---ACUGCc-GCU--GCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110532 0.66 0.988243
Target:  5'- gUGCGGGagaacGCGGCGACGacgugcuccgcgUCGUCGc -3'
miRNA:   3'- gGCGCCUaac--UGCCGCUGCa-----------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 70667 0.66 0.988243
Target:  5'- gCGCGGcggccgccgcGGCGGUGACGUccUGUCGc -3'
miRNA:   3'- gGCGCCuaa-------CUGCCGCUGCAa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 135467 0.66 0.987063
Target:  5'- cCCGCGGcc-GACGaCGACGccgcCGUCGa -3'
miRNA:   3'- -GGCGCCuaaCUGCcGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 189854 0.66 0.987063
Target:  5'- gCCGCGGAgccGuCGGCGuCG-UCGcCGc -3'
miRNA:   3'- -GGCGCCUaa-CuGCCGCuGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 61903 0.66 0.987063
Target:  5'- gCGCGGcgagcGCaGCGACG-UCGUCAc -3'
miRNA:   3'- gGCGCCuaac-UGcCGCUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 192020 0.66 0.98644
Target:  5'- gCCGCGGcugcuguuucugUGGCGGCGGCGgcUGc-- -3'
miRNA:   3'- -GGCGCCua----------ACUGCCGCUGCaaGCagu -5'
10769 5' -53.9 NC_002794.1 + 32869 0.66 0.985462
Target:  5'- gCCgGCGGGc-GGCGGCGGCGgcggCGgCAu -3'
miRNA:   3'- -GG-CGCCUaaCUGCCGCUGCaa--GCaGU- -5'
10769 5' -53.9 NC_002794.1 + 12323 0.66 0.985462
Target:  5'- uCCGCGGuccgcgUGACcguGGaGACGgaCGUCAc -3'
miRNA:   3'- -GGCGCCua----ACUG---CCgCUGCaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 108893 0.66 0.985462
Target:  5'- gCGCGGuguacGACGGCGucaaacCGUUCGa-- -3'
miRNA:   3'- gGCGCCuaa--CUGCCGCu-----GCAAGCagu -5'
10769 5' -53.9 NC_002794.1 + 111762 0.66 0.985462
Target:  5'- gCGCGGcgccgucggGGCGGgcuCGUUCGUCAg -3'
miRNA:   3'- gGCGCCuaa------CUGCCgcuGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 146751 0.66 0.985462
Target:  5'- gCCGCGGAUcggggGAgGGaCGAUGgUCG-CAa -3'
miRNA:   3'- -GGCGCCUAa----CUgCC-GCUGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 121592 0.66 0.985462
Target:  5'- gCGCGGGgucguuCGGCGACGauUUCGaagUCAu -3'
miRNA:   3'- gGCGCCUaacu--GCCGCUGC--AAGC---AGU- -5'
10769 5' -53.9 NC_002794.1 + 91043 0.66 0.985462
Target:  5'- cCCuCGGGgugGACGG-GGCGcgcgUCGUCAu -3'
miRNA:   3'- -GGcGCCUaa-CUGCCgCUGCa---AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 88928 0.66 0.983714
Target:  5'- cCCGCGGu---GCGGCGAUGgcgCGg-- -3'
miRNA:   3'- -GGCGCCuaacUGCCGCUGCaa-GCagu -5'
10769 5' -53.9 NC_002794.1 + 113168 0.66 0.983714
Target:  5'- gCGCGcgcgGGCGGCGGCGgUCG-CGg -3'
miRNA:   3'- gGCGCcuaaCUGCCGCUGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 142947 0.66 0.983714
Target:  5'- gCCGaGGGgaaGuCGGCGGCGUcgagcuccUCGUCGa -3'
miRNA:   3'- -GGCgCCUaa-CuGCCGCUGCA--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 95829 0.66 0.981812
Target:  5'- gCCGgGGGagcGGCGGCGGCGgcCGg-- -3'
miRNA:   3'- -GGCgCCUaa-CUGCCGCUGCaaGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.