Results 21 - 40 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 189854 | 0.66 | 0.987063 |
Target: 5'- gCCGCGGAgccGuCGGCGuCG-UCGcCGc -3' miRNA: 3'- -GGCGCCUaa-CuGCCGCuGCaAGCaGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 91043 | 0.66 | 0.985462 |
Target: 5'- cCCuCGGGgugGACGG-GGCGcgcgUCGUCAu -3' miRNA: 3'- -GGcGCCUaa-CUGCCgCUGCa---AGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 94202 | 0.67 | 0.971695 |
Target: 5'- -aGCGGuugcgcuugugacggUGGCGGCGACGggCGggCGg -3' miRNA: 3'- ggCGCCua-------------ACUGCCGCUGCaaGCa-GU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 24021 | 0.67 | 0.969727 |
Target: 5'- aCCGCGGcgccuCGGCGACGgcgGUCc -3' miRNA: 3'- -GGCGCCuaacuGCCGCUGCaagCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 58837 | 0.67 | 0.969727 |
Target: 5'- gCCGCGcGAg-GACGcCGACGUgcagcUCGUCGc -3' miRNA: 3'- -GGCGC-CUaaCUGCcGCUGCA-----AGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 136088 | 0.67 | 0.969727 |
Target: 5'- aCGCGGGggaGGCGuaGACGUcggCGUCc -3' miRNA: 3'- gGCGCCUaa-CUGCcgCUGCAa--GCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 110143 | 0.67 | 0.969727 |
Target: 5'- aCUGCGGAgaGAgGGUGAgcaCGU-CGUCGc -3' miRNA: 3'- -GGCGCCUaaCUgCCGCU---GCAaGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 110338 | 0.67 | 0.969727 |
Target: 5'- gCGCGGGggGucuccgccgUGGCGACGccUCGUCGu -3' miRNA: 3'- gGCGCCUaaCu--------GCCGCUGCa-AGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 106345 | 0.67 | 0.969727 |
Target: 5'- uUCGcCGGGUcGACGGCgGGCGggCGcCGg -3' miRNA: 3'- -GGC-GCCUAaCUGCCG-CUGCaaGCaGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 150805 | 0.67 | 0.967964 |
Target: 5'- cCCGCGGcg-GACGGCcGAgccgcuggagcugauCG-UCGUCAg -3' miRNA: 3'- -GGCGCCuaaCUGCCG-CU---------------GCaAGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 53890 | 0.67 | 0.97251 |
Target: 5'- cUCGuCGGGacucCGGCGGCGUccUCGUCGc -3' miRNA: 3'- -GGC-GCCUaacuGCCGCUGCA--AGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 115894 | 0.67 | 0.97251 |
Target: 5'- uCCGCGGAgc-GCGG-GGgGUUCGUgGg -3' miRNA: 3'- -GGCGCCUaacUGCCgCUgCAAGCAgU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 179115 | 0.67 | 0.975103 |
Target: 5'- uCCGCGGuccgGGCGcGCGGuCGgucgaUCGUCu -3' miRNA: 3'- -GGCGCCuaa-CUGC-CGCU-GCa----AGCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 32652 | 0.67 | 0.977514 |
Target: 5'- aCCGgGGc--GACGGCGcCGUccccgUCGUCc -3' miRNA: 3'- -GGCgCCuaaCUGCCGCuGCA-----AGCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 106378 | 0.67 | 0.975103 |
Target: 5'- gCGCGGAgggcaGACGGCgGGCGaaCGgUCGg -3' miRNA: 3'- gGCGCCUaa---CUGCCG-CUGCaaGC-AGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 143712 | 0.67 | 0.975103 |
Target: 5'- aCCGCGGGccc-CGGCGgGCG-UCGUCc -3' miRNA: 3'- -GGCGCCUaacuGCCGC-UGCaAGCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 98366 | 0.67 | 0.975103 |
Target: 5'- gCCGCGcGGcUGGCGGgaGACGUgaucgCGUUg -3' miRNA: 3'- -GGCGC-CUaACUGCCg-CUGCAa----GCAGu -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 118249 | 0.67 | 0.974345 |
Target: 5'- uCgGCGGGcuggaggucggccggGGCGGCGGCGccggCGUCGg -3' miRNA: 3'- -GgCGCCUaa-------------CUGCCGCUGCaa--GCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 115403 | 0.67 | 0.975103 |
Target: 5'- gCUGCGGAcuccagUGGCGGCaGAC---CGUCAg -3' miRNA: 3'- -GGCGCCUa-----ACUGCCG-CUGcaaGCAGU- -5' |
|||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 107537 | 0.67 | 0.966749 |
Target: 5'- gCGCGGcgccGGCGGCGACGacCG-CGg -3' miRNA: 3'- gGCGCCuaa-CUGCCGCUGCaaGCaGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home