Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10769 | 5' | -53.9 | NC_002794.1 | + | 97863 | 1.1 | 0.006169 |
Target: 5'- cCCGCGGAUUGACGGCGACGUUCGUCAc -3' miRNA: 3'- -GGCGCCUAACUGCCGCUGCAAGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 120065 | 0.77 | 0.547147 |
Target: 5'- gCCGCGGAggccgacgcggcggUGGCGGCGACGacCGUg- -3' miRNA: 3'- -GGCGCCUa-------------ACUGCCGCUGCaaGCAgu -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 149496 | 0.77 | 0.543249 |
Target: 5'- cUCGgGGAUgggGAUGGUGACGgggUCGUCGc -3' miRNA: 3'- -GGCgCCUAa--CUGCCGCUGCa--AGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 21918 | 0.76 | 0.612467 |
Target: 5'- gCgGCGGAgacGACGGCGGCGgcgcggcgcUCGUCGa -3' miRNA: 3'- -GgCGCCUaa-CUGCCGCUGCa--------AGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 19017 | 0.76 | 0.612467 |
Target: 5'- cCCGCGGGUUucgcccUGGCGGCGUUCGaCAa -3' miRNA: 3'- -GGCGCCUAAcu----GCCGCUGCAAGCaGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 82038 | 0.75 | 0.652469 |
Target: 5'- aUCGCGuGGgcGGCGGCGGCGgcggCGUCGu -3' miRNA: 3'- -GGCGC-CUaaCUGCCGCUGCaa--GCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 114705 | 0.75 | 0.669423 |
Target: 5'- cCUGCGaGAcgGACGGCGGCGgcggcggcuccgggUUCGUCGa -3' miRNA: 3'- -GGCGC-CUaaCUGCCGCUGC--------------AAGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 49410 | 0.74 | 0.721559 |
Target: 5'- aCgGCGGccgcGGCGGCGGCGgcCGUCAc -3' miRNA: 3'- -GgCGCCuaa-CUGCCGCUGCaaGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 138437 | 0.74 | 0.711842 |
Target: 5'- gCCGCGG--UGGCGGCGGCGccUCGg-- -3' miRNA: 3'- -GGCGCCuaACUGCCGCUGCa-AGCagu -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 46755 | 0.74 | 0.750238 |
Target: 5'- gCCGCuGGAUcGACGGCGAC-UUCGa-- -3' miRNA: 3'- -GGCG-CCUAaCUGCCGCUGcAAGCagu -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 138666 | 0.74 | 0.731203 |
Target: 5'- uCUGCGGAUUGGucugcgUGGCGGCGggUCGUg- -3' miRNA: 3'- -GGCGCCUAACU------GCCGCUGCa-AGCAgu -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 137327 | 0.74 | 0.750238 |
Target: 5'- uCCGCGGAagguuccgcgGACGGCucGGCG-UCGUCGg -3' miRNA: 3'- -GGCGCCUaa--------CUGCCG--CUGCaAGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 128172 | 0.74 | 0.750238 |
Target: 5'- gCCGCGGAcgGGuCGGUGACc-UCGUCGg -3' miRNA: 3'- -GGCGCCUaaCU-GCCGCUGcaAGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 54988 | 0.73 | 0.768875 |
Target: 5'- gCCGCGGc--GACGGCGGCGacUCGcCGg -3' miRNA: 3'- -GGCGCCuaaCUGCCGCUGCa-AGCaGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 136958 | 0.73 | 0.778023 |
Target: 5'- cCCGCaGGg--GACGGUGACGagcUCGUCGc -3' miRNA: 3'- -GGCG-CCuaaCUGCCGCUGCa--AGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 129047 | 0.73 | 0.75961 |
Target: 5'- uCUGCGGucgUGGCGcGCGACGgugUGUCGc -3' miRNA: 3'- -GGCGCCua-ACUGC-CGCUGCaa-GCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 44738 | 0.72 | 0.804686 |
Target: 5'- gCCGcCGGAgggcuaaGACGGCGAC--UCGUCGc -3' miRNA: 3'- -GGC-GCCUaa-----CUGCCGCUGcaAGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 191672 | 0.72 | 0.830005 |
Target: 5'- gCGcCGGcAgcGGCGGCGGCGUgcccUCGUCGc -3' miRNA: 3'- gGC-GCC-UaaCUGCCGCUGCA----AGCAGU- -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 166248 | 0.72 | 0.821728 |
Target: 5'- aCGUGGAagugUGugGGCGGCGgccaUCGUg- -3' miRNA: 3'- gGCGCCUa---ACugCCGCUGCa---AGCAgu -5' |
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10769 | 5' | -53.9 | NC_002794.1 | + | 98983 | 0.72 | 0.804686 |
Target: 5'- gCCGUGGccucggUGGuCGGCGGC-UUCGUCAg -3' miRNA: 3'- -GGCGCCua----ACU-GCCGCUGcAAGCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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