miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 97863 1.1 0.006169
Target:  5'- cCCGCGGAUUGACGGCGACGUUCGUCAc -3'
miRNA:   3'- -GGCGCCUAACUGCCGCUGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 149496 0.77 0.543249
Target:  5'- cUCGgGGAUgggGAUGGUGACGgggUCGUCGc -3'
miRNA:   3'- -GGCgCCUAa--CUGCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 120065 0.77 0.547147
Target:  5'- gCCGCGGAggccgacgcggcggUGGCGGCGACGacCGUg- -3'
miRNA:   3'- -GGCGCCUa-------------ACUGCCGCUGCaaGCAgu -5'
10769 5' -53.9 NC_002794.1 + 19017 0.76 0.612467
Target:  5'- cCCGCGGGUUucgcccUGGCGGCGUUCGaCAa -3'
miRNA:   3'- -GGCGCCUAAcu----GCCGCUGCAAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 21918 0.76 0.612467
Target:  5'- gCgGCGGAgacGACGGCGGCGgcgcggcgcUCGUCGa -3'
miRNA:   3'- -GgCGCCUaa-CUGCCGCUGCa--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 82038 0.75 0.652469
Target:  5'- aUCGCGuGGgcGGCGGCGGCGgcggCGUCGu -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 114705 0.75 0.669423
Target:  5'- cCUGCGaGAcgGACGGCGGCGgcggcggcuccgggUUCGUCGa -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGC--------------AAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 138437 0.74 0.711842
Target:  5'- gCCGCGG--UGGCGGCGGCGccUCGg-- -3'
miRNA:   3'- -GGCGCCuaACUGCCGCUGCa-AGCagu -5'
10769 5' -53.9 NC_002794.1 + 49410 0.74 0.721559
Target:  5'- aCgGCGGccgcGGCGGCGGCGgcCGUCAc -3'
miRNA:   3'- -GgCGCCuaa-CUGCCGCUGCaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 138666 0.74 0.731203
Target:  5'- uCUGCGGAUUGGucugcgUGGCGGCGggUCGUg- -3'
miRNA:   3'- -GGCGCCUAACU------GCCGCUGCa-AGCAgu -5'
10769 5' -53.9 NC_002794.1 + 137327 0.74 0.750238
Target:  5'- uCCGCGGAagguuccgcgGACGGCucGGCG-UCGUCGg -3'
miRNA:   3'- -GGCGCCUaa--------CUGCCG--CUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 46755 0.74 0.750238
Target:  5'- gCCGCuGGAUcGACGGCGAC-UUCGa-- -3'
miRNA:   3'- -GGCG-CCUAaCUGCCGCUGcAAGCagu -5'
10769 5' -53.9 NC_002794.1 + 128172 0.74 0.750238
Target:  5'- gCCGCGGAcgGGuCGGUGACc-UCGUCGg -3'
miRNA:   3'- -GGCGCCUaaCU-GCCGCUGcaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 129047 0.73 0.75961
Target:  5'- uCUGCGGucgUGGCGcGCGACGgugUGUCGc -3'
miRNA:   3'- -GGCGCCua-ACUGC-CGCUGCaa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 54988 0.73 0.768875
Target:  5'- gCCGCGGc--GACGGCGGCGacUCGcCGg -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCa-AGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 136958 0.73 0.778023
Target:  5'- cCCGCaGGg--GACGGUGACGagcUCGUCGc -3'
miRNA:   3'- -GGCG-CCuaaCUGCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 98983 0.72 0.804686
Target:  5'- gCCGUGGccucggUGGuCGGCGGC-UUCGUCAg -3'
miRNA:   3'- -GGCGCCua----ACU-GCCGCUGcAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 44738 0.72 0.804686
Target:  5'- gCCGcCGGAgggcuaaGACGGCGAC--UCGUCGc -3'
miRNA:   3'- -GGC-GCCUaa-----CUGCCGCUGcaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 124021 0.72 0.821728
Target:  5'- gCCGCGGAagaGACGGUGGcCGUcUGUCu -3'
miRNA:   3'- -GGCGCCUaa-CUGCCGCU-GCAaGCAGu -5'
10769 5' -53.9 NC_002794.1 + 166248 0.72 0.821728
Target:  5'- aCGUGGAagugUGugGGCGGCGgccaUCGUg- -3'
miRNA:   3'- gGCGCCUa---ACugCCGCUGCa---AGCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.