miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 194930 0.72 0.826714
Target:  5'- gCCGCaccagcuccGACGGCGACG-UCGUCAg -3'
miRNA:   3'- -GGCGccuaa----CUGCCGCUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 191672 0.72 0.830005
Target:  5'- gCGcCGGcAgcGGCGGCGGCGUgcccUCGUCGc -3'
miRNA:   3'- gGC-GCC-UaaCUGCCGCUGCA----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 75375 0.72 0.830005
Target:  5'- gCCGCGGcc-GGCGGCGGCGgccucucccCGUCc -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaa-------GCAGu -5'
10769 5' -53.9 NC_002794.1 + 47340 0.72 0.838111
Target:  5'- cCCGCGGc--GGCGGCcuccgGACGUUCGcgcUCAa -3'
miRNA:   3'- -GGCGCCuaaCUGCCG-----CUGCAAGC---AGU- -5'
10769 5' -53.9 NC_002794.1 + 91872 0.71 0.861328
Target:  5'- cCCGgGGG-UGGCGGCGGCGgcCG-CGa -3'
miRNA:   3'- -GGCgCCUaACUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 50760 0.71 0.861328
Target:  5'- uCCGCcccGGgcGGCGGCGACGgcgCGUCu -3'
miRNA:   3'- -GGCGc--CUaaCUGCCGCUGCaa-GCAGu -5'
10769 5' -53.9 NC_002794.1 + 99586 0.71 0.868679
Target:  5'- gUGCGGAgggcgcGGCGGCGGCGcgCGcUCGc -3'
miRNA:   3'- gGCGCCUaa----CUGCCGCUGCaaGC-AGU- -5'
10769 5' -53.9 NC_002794.1 + 183199 0.71 0.882768
Target:  5'- gCCGCcacgccGGCGGCG-CGUUCGUCGc -3'
miRNA:   3'- -GGCGccuaa-CUGCCGCuGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110626 0.7 0.889496
Target:  5'- gCCGCGGcgccGCGGCGGCGgg-GUCGg -3'
miRNA:   3'- -GGCGCCuaacUGCCGCUGCaagCAGU- -5'
10769 5' -53.9 NC_002794.1 + 125749 0.7 0.889496
Target:  5'- gCCGCGGGacGGCGGCcGGCGgcUCGcCAc -3'
miRNA:   3'- -GGCGCCUaaCUGCCG-CUGCa-AGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 55271 0.7 0.892127
Target:  5'- gCCGgGGGgcggcggUGGCGGCGACGagggcggcggcggCGUCGc -3'
miRNA:   3'- -GGCgCCUa------ACUGCCGCUGCaa-----------GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 141368 0.7 0.896007
Target:  5'- gCgGCGGAgaGaACGGCGAcCGUcCGUCGu -3'
miRNA:   3'- -GgCGCCUaaC-UGCCGCU-GCAaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 48434 0.7 0.902299
Target:  5'- -gGCGGAggUGGCGGCGGCcaUCGg-- -3'
miRNA:   3'- ggCGCCUa-ACUGCCGCUGcaAGCagu -5'
10769 5' -53.9 NC_002794.1 + 26639 0.7 0.902299
Target:  5'- uCCGCGcacccgGACGGCGGCcggcUCGUCGg -3'
miRNA:   3'- -GGCGCcuaa--CUGCCGCUGca--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 49017 0.7 0.902299
Target:  5'- gCCGCGGcggccGCGGCGuCGUccggcgcggUCGUCAg -3'
miRNA:   3'- -GGCGCCuaac-UGCCGCuGCA---------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 116074 0.7 0.914211
Target:  5'- gUCGCGGAgcgcuCGGCGcgGCGgUCGUCGc -3'
miRNA:   3'- -GGCGCCUaacu-GCCGC--UGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 102550 0.69 0.919827
Target:  5'- gCGUGGA--GACGGCGGCccuggugcugUCGUCGg -3'
miRNA:   3'- gGCGCCUaaCUGCCGCUGca--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 178430 0.69 0.930376
Target:  5'- aCCGCGcGAcgGGCGGUGACGccgUGUUu -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGCaa-GCAGu -5'
10769 5' -53.9 NC_002794.1 + 65927 0.69 0.940012
Target:  5'- gCCgGCGGcggUGGCgucGGCGGCGguaUCGUCGc -3'
miRNA:   3'- -GG-CGCCua-ACUG---CCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 94495 0.69 0.944489
Target:  5'- gCCGCGGGccgUGGCGGgGAUGaauaCGUUg -3'
miRNA:   3'- -GGCGCCUa--ACUGCCgCUGCaa--GCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.