miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 109156 0.66 0.979747
Target:  5'- -gGCGGGggaGAUGGCGACGagCGgCGg -3'
miRNA:   3'- ggCGCCUaa-CUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 120030 0.66 0.979747
Target:  5'- cUCGCGGGgacgucgucaUGACGGCGGCGguggCGn-- -3'
miRNA:   3'- -GGCGCCUa---------ACUGCCGCUGCaa--GCagu -5'
10769 5' -53.9 NC_002794.1 + 112735 0.67 0.977514
Target:  5'- aCGCGGAagGcgcggugcuccGCGGCGGCGgg-GUCGg -3'
miRNA:   3'- gGCGCCUaaC-----------UGCCGCUGCaagCAGU- -5'
10769 5' -53.9 NC_002794.1 + 32652 0.67 0.977514
Target:  5'- aCCGgGGc--GACGGCGcCGUccccgUCGUCc -3'
miRNA:   3'- -GGCgCCuaaCUGCCGCuGCA-----AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 115403 0.67 0.975103
Target:  5'- gCUGCGGAcuccagUGGCGGCaGAC---CGUCAg -3'
miRNA:   3'- -GGCGCCUa-----ACUGCCG-CUGcaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 98366 0.67 0.975103
Target:  5'- gCCGCGcGGcUGGCGGgaGACGUgaucgCGUUg -3'
miRNA:   3'- -GGCGC-CUaACUGCCg-CUGCAa----GCAGu -5'
10769 5' -53.9 NC_002794.1 + 143712 0.67 0.975103
Target:  5'- aCCGCGGGccc-CGGCGgGCG-UCGUCc -3'
miRNA:   3'- -GGCGCCUaacuGCCGC-UGCaAGCAGu -5'
10769 5' -53.9 NC_002794.1 + 106378 0.67 0.975103
Target:  5'- gCGCGGAgggcaGACGGCgGGCGaaCGgUCGg -3'
miRNA:   3'- gGCGCCUaa---CUGCCG-CUGCaaGC-AGU- -5'
10769 5' -53.9 NC_002794.1 + 179115 0.67 0.975103
Target:  5'- uCCGCGGuccgGGCGcGCGGuCGgucgaUCGUCu -3'
miRNA:   3'- -GGCGCCuaa-CUGC-CGCU-GCa----AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 118249 0.67 0.974345
Target:  5'- uCgGCGGGcuggaggucggccggGGCGGCGGCGccggCGUCGg -3'
miRNA:   3'- -GgCGCCUaa-------------CUGCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 53890 0.67 0.97251
Target:  5'- cUCGuCGGGacucCGGCGGCGUccUCGUCGc -3'
miRNA:   3'- -GGC-GCCUaacuGCCGCUGCA--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 115894 0.67 0.97251
Target:  5'- uCCGCGGAgc-GCGG-GGgGUUCGUgGg -3'
miRNA:   3'- -GGCGCCUaacUGCCgCUgCAAGCAgU- -5'
10769 5' -53.9 NC_002794.1 + 94202 0.67 0.971695
Target:  5'- -aGCGGuugcgcuugugacggUGGCGGCGACGggCGggCGg -3'
miRNA:   3'- ggCGCCua-------------ACUGCCGCUGCaaGCa-GU- -5'
10769 5' -53.9 NC_002794.1 + 106345 0.67 0.969727
Target:  5'- uUCGcCGGGUcGACGGCgGGCGggCGcCGg -3'
miRNA:   3'- -GGC-GCCUAaCUGCCG-CUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 110338 0.67 0.969727
Target:  5'- gCGCGGGggGucuccgccgUGGCGACGccUCGUCGu -3'
miRNA:   3'- gGCGCCUaaCu--------GCCGCUGCa-AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110143 0.67 0.969727
Target:  5'- aCUGCGGAgaGAgGGUGAgcaCGU-CGUCGc -3'
miRNA:   3'- -GGCGCCUaaCUgCCGCU---GCAaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 136088 0.67 0.969727
Target:  5'- aCGCGGGggaGGCGuaGACGUcggCGUCc -3'
miRNA:   3'- gGCGCCUaa-CUGCcgCUGCAa--GCAGu -5'
10769 5' -53.9 NC_002794.1 + 58837 0.67 0.969727
Target:  5'- gCCGCGcGAg-GACGcCGACGUgcagcUCGUCGc -3'
miRNA:   3'- -GGCGC-CUaaCUGCcGCUGCA-----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 24021 0.67 0.969727
Target:  5'- aCCGCGGcgccuCGGCGACGgcgGUCc -3'
miRNA:   3'- -GGCGCCuaacuGCCGCUGCaagCAGu -5'
10769 5' -53.9 NC_002794.1 + 150805 0.67 0.967964
Target:  5'- cCCGCGGcg-GACGGCcGAgccgcuggagcugauCG-UCGUCAg -3'
miRNA:   3'- -GGCGCCuaaCUGCCG-CU---------------GCaAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.