miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 110263 0.67 0.966749
Target:  5'- gCGCGGcgUcgcGACGGCGGCcgcCGUCc -3'
miRNA:   3'- gGCGCCuaA---CUGCCGCUGcaaGCAGu -5'
10769 5' -53.9 NC_002794.1 + 107537 0.67 0.966749
Target:  5'- gCGCGGcgccGGCGGCGACGacCG-CGg -3'
miRNA:   3'- gGCGCCuaa-CUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 69759 0.68 0.963569
Target:  5'- gCCGCGGg--GAUGGCGACGa------ -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaagcagu -5'
10769 5' -53.9 NC_002794.1 + 66734 0.68 0.963569
Target:  5'- aCCGcCGGcggUGGCGGCGGCG--CGUa- -3'
miRNA:   3'- -GGC-GCCua-ACUGCCGCUGCaaGCAgu -5'
10769 5' -53.9 NC_002794.1 + 138099 0.68 0.960183
Target:  5'- gCgGCGGAccgucugcagGAgGGCGugGUgcUCGUCGc -3'
miRNA:   3'- -GgCGCCUaa--------CUgCCGCugCA--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 94886 0.68 0.956586
Target:  5'- -aGCGGAUccggcUGACGGuCGACGUggCGa-- -3'
miRNA:   3'- ggCGCCUA-----ACUGCC-GCUGCAa-GCagu -5'
10769 5' -53.9 NC_002794.1 + 179679 0.68 0.952774
Target:  5'- cCCGCGGcggcGACGGUGGCGgcggCGaCGg -3'
miRNA:   3'- -GGCGCCuaa-CUGCCGCUGCaa--GCaGU- -5'
10769 5' -53.9 NC_002794.1 + 119431 0.68 0.952774
Target:  5'- cUCGCaGGUccGACGGCGGCGgcgguggcggCGUCGa -3'
miRNA:   3'- -GGCGcCUAa-CUGCCGCUGCaa--------GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 41244 0.68 0.952774
Target:  5'- gCCGCGGccgccGACGcCGGCGgcccgUCGUCGc -3'
miRNA:   3'- -GGCGCCuaa--CUGCcGCUGCa----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 54720 0.68 0.952774
Target:  5'- gCCGCGGAUguUGACGuucaGCGAguuggugucCGUggCGUCGu -3'
miRNA:   3'- -GGCGCCUA--ACUGC----CGCU---------GCAa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 77994 0.68 0.952774
Target:  5'- aCgGCGGGcgUUGuucCGGCGGCGgcgcCGUCGg -3'
miRNA:   3'- -GgCGCCU--AACu--GCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 140177 0.68 0.952774
Target:  5'- --uUGGAUcgGGuCGGCGACGgcgUCGUCGa -3'
miRNA:   3'- ggcGCCUAa-CU-GCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 21659 0.68 0.952774
Target:  5'- gCgGCGGcggUGGCGGCGGCGguauUCGcCc -3'
miRNA:   3'- -GgCGCCua-ACUGCCGCUGCa---AGCaGu -5'
10769 5' -53.9 NC_002794.1 + 154375 0.68 0.95238
Target:  5'- gCCGCGGc--GGCGGCGGgcacgccCGUUCG-CGu -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCU-------GCAAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 129933 0.68 0.948742
Target:  5'- gCCGUGGc--GACGGCGGCGgcggCGg-- -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaa--GCagu -5'
10769 5' -53.9 NC_002794.1 + 154611 0.68 0.948742
Target:  5'- gCGCGGAUcGAUaGGgGACGUggggcuccagUCGUCu -3'
miRNA:   3'- gGCGCCUAaCUG-CCgCUGCA----------AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 116130 0.68 0.948742
Target:  5'- gCCGCGGc--GGCGGCGGCGg-CGg-- -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaaGCagu -5'
10769 5' -53.9 NC_002794.1 + 116005 0.68 0.948742
Target:  5'- aCCGCGGAgaccGCGGUGGCGaUUGgcgCGg -3'
miRNA:   3'- -GGCGCCUaac-UGCCGCUGCaAGCa--GU- -5'
10769 5' -53.9 NC_002794.1 + 94495 0.69 0.944489
Target:  5'- gCCGCGGGccgUGGCGGgGAUGaauaCGUUg -3'
miRNA:   3'- -GGCGCCUa--ACUGCCgCUGCaa--GCAGu -5'
10769 5' -53.9 NC_002794.1 + 65927 0.69 0.940012
Target:  5'- gCCgGCGGcggUGGCgucGGCGGCGguaUCGUCGc -3'
miRNA:   3'- -GG-CGCCua-ACUG---CCGCUGCa--AGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.