miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 12323 0.66 0.985462
Target:  5'- uCCGCGGuccgcgUGACcguGGaGACGgaCGUCAc -3'
miRNA:   3'- -GGCGCCua----ACUG---CCgCUGCaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 19017 0.76 0.612467
Target:  5'- cCCGCGGGUUucgcccUGGCGGCGUUCGaCAa -3'
miRNA:   3'- -GGCGCCUAAcu----GCCGCUGCAAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 21659 0.68 0.952774
Target:  5'- gCgGCGGcggUGGCGGCGGCGguauUCGcCc -3'
miRNA:   3'- -GgCGCCua-ACUGCCGCUGCa---AGCaGu -5'
10769 5' -53.9 NC_002794.1 + 21918 0.76 0.612467
Target:  5'- gCgGCGGAgacGACGGCGGCGgcgcggcgcUCGUCGa -3'
miRNA:   3'- -GgCGCCUaa-CUGCCGCUGCa--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 24021 0.67 0.969727
Target:  5'- aCCGCGGcgccuCGGCGACGgcgGUCc -3'
miRNA:   3'- -GGCGCCuaacuGCCGCUGCaagCAGu -5'
10769 5' -53.9 NC_002794.1 + 26639 0.7 0.902299
Target:  5'- uCCGCGcacccgGACGGCGGCcggcUCGUCGg -3'
miRNA:   3'- -GGCGCcuaa--CUGCCGCUGca--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 32652 0.67 0.977514
Target:  5'- aCCGgGGc--GACGGCGcCGUccccgUCGUCc -3'
miRNA:   3'- -GGCgCCuaaCUGCCGCuGCA-----AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 32869 0.66 0.985462
Target:  5'- gCCgGCGGGc-GGCGGCGGCGgcggCGgCAu -3'
miRNA:   3'- -GG-CGCCUaaCUGCCGCUGCaa--GCaGU- -5'
10769 5' -53.9 NC_002794.1 + 41244 0.68 0.952774
Target:  5'- gCCGCGGccgccGACGcCGGCGgcccgUCGUCGc -3'
miRNA:   3'- -GGCGCCuaa--CUGCcGCUGCa----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 44738 0.72 0.804686
Target:  5'- gCCGcCGGAgggcuaaGACGGCGAC--UCGUCGc -3'
miRNA:   3'- -GGC-GCCUaa-----CUGCCGCUGcaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 46755 0.74 0.750238
Target:  5'- gCCGCuGGAUcGACGGCGAC-UUCGa-- -3'
miRNA:   3'- -GGCG-CCUAaCUGCCGCUGcAAGCagu -5'
10769 5' -53.9 NC_002794.1 + 47340 0.72 0.838111
Target:  5'- cCCGCGGc--GGCGGCcuccgGACGUUCGcgcUCAa -3'
miRNA:   3'- -GGCGCCuaaCUGCCG-----CUGCAAGC---AGU- -5'
10769 5' -53.9 NC_002794.1 + 48434 0.7 0.902299
Target:  5'- -gGCGGAggUGGCGGCGGCcaUCGg-- -3'
miRNA:   3'- ggCGCCUa-ACUGCCGCUGcaAGCagu -5'
10769 5' -53.9 NC_002794.1 + 49017 0.7 0.902299
Target:  5'- gCCGCGGcggccGCGGCGuCGUccggcgcggUCGUCAg -3'
miRNA:   3'- -GGCGCCuaac-UGCCGCuGCA---------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 49410 0.74 0.721559
Target:  5'- aCgGCGGccgcGGCGGCGGCGgcCGUCAc -3'
miRNA:   3'- -GgCGCCuaa-CUGCCGCUGCaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 50760 0.71 0.861328
Target:  5'- uCCGCcccGGgcGGCGGCGACGgcgCGUCu -3'
miRNA:   3'- -GGCGc--CUaaCUGCCGCUGCaa-GCAGu -5'
10769 5' -53.9 NC_002794.1 + 52778 0.66 0.988524
Target:  5'- gCCGCGGGaucgUGACGcuCGAgcCGcUCGUCGg -3'
miRNA:   3'- -GGCGCCUa---ACUGCc-GCU--GCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 53890 0.67 0.97251
Target:  5'- cUCGuCGGGacucCGGCGGCGUccUCGUCGc -3'
miRNA:   3'- -GGC-GCCUaacuGCCGCUGCA--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 54720 0.68 0.952774
Target:  5'- gCCGCGGAUguUGACGuucaGCGAguuggugucCGUggCGUCGu -3'
miRNA:   3'- -GGCGCCUA--ACUGC----CGCU---------GCAa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 54988 0.73 0.768875
Target:  5'- gCCGCGGc--GACGGCGGCGacUCGcCGg -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCa-AGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.