miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 55271 0.7 0.892127
Target:  5'- gCCGgGGGgcggcggUGGCGGCGACGagggcggcggcggCGUCGc -3'
miRNA:   3'- -GGCgCCUa------ACUGCCGCUGCaa-----------GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 58837 0.67 0.969727
Target:  5'- gCCGCGcGAg-GACGcCGACGUgcagcUCGUCGc -3'
miRNA:   3'- -GGCGC-CUaaCUGCcGCUGCA-----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 61903 0.66 0.987063
Target:  5'- gCGCGGcgagcGCaGCGACG-UCGUCAc -3'
miRNA:   3'- gGCGCCuaac-UGcCGCUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 65927 0.69 0.940012
Target:  5'- gCCgGCGGcggUGGCgucGGCGGCGguaUCGUCGc -3'
miRNA:   3'- -GG-CGCCua-ACUG---CCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 66734 0.68 0.963569
Target:  5'- aCCGcCGGcggUGGCGGCGGCG--CGUa- -3'
miRNA:   3'- -GGC-GCCua-ACUGCCGCUGCaaGCAgu -5'
10769 5' -53.9 NC_002794.1 + 69759 0.68 0.963569
Target:  5'- gCCGCGGg--GAUGGCGACGa------ -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaagcagu -5'
10769 5' -53.9 NC_002794.1 + 70667 0.66 0.988243
Target:  5'- gCGCGGcggccgccgcGGCGGUGACGUccUGUCGc -3'
miRNA:   3'- gGCGCCuaa-------CUGCCGCUGCAa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 75375 0.72 0.830005
Target:  5'- gCCGCGGcc-GGCGGCGGCGgccucucccCGUCc -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaa-------GCAGu -5'
10769 5' -53.9 NC_002794.1 + 77994 0.68 0.952774
Target:  5'- aCgGCGGGcgUUGuucCGGCGGCGgcgcCGUCGg -3'
miRNA:   3'- -GgCGCCU--AACu--GCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 82038 0.75 0.652469
Target:  5'- aUCGCGuGGgcGGCGGCGGCGgcggCGUCGu -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 88928 0.66 0.983714
Target:  5'- cCCGCGGu---GCGGCGAUGgcgCGg-- -3'
miRNA:   3'- -GGCGCCuaacUGCCGCUGCaa-GCagu -5'
10769 5' -53.9 NC_002794.1 + 90700 0.66 0.988524
Target:  5'- cCCGCGGcagGACGaaugguGCGACGUgcUCG-CGg -3'
miRNA:   3'- -GGCGCCuaaCUGC------CGCUGCA--AGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 91043 0.66 0.985462
Target:  5'- cCCuCGGGgugGACGG-GGCGcgcgUCGUCAu -3'
miRNA:   3'- -GGcGCCUaa-CUGCCgCUGCa---AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 91872 0.71 0.861328
Target:  5'- cCCGgGGG-UGGCGGCGGCGgcCG-CGa -3'
miRNA:   3'- -GGCgCCUaACUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 94202 0.67 0.971695
Target:  5'- -aGCGGuugcgcuugugacggUGGCGGCGACGggCGggCGg -3'
miRNA:   3'- ggCGCCua-------------ACUGCCGCUGCaaGCa-GU- -5'
10769 5' -53.9 NC_002794.1 + 94495 0.69 0.944489
Target:  5'- gCCGCGGGccgUGGCGGgGAUGaauaCGUUg -3'
miRNA:   3'- -GGCGCCUa--ACUGCCgCUGCaa--GCAGu -5'
10769 5' -53.9 NC_002794.1 + 94886 0.68 0.956586
Target:  5'- -aGCGGAUccggcUGACGGuCGACGUggCGa-- -3'
miRNA:   3'- ggCGCCUA-----ACUGCC-GCUGCAa-GCagu -5'
10769 5' -53.9 NC_002794.1 + 95829 0.66 0.981812
Target:  5'- gCCGgGGGagcGGCGGCGGCGgcCGg-- -3'
miRNA:   3'- -GGCgCCUaa-CUGCCGCUGCaaGCagu -5'
10769 5' -53.9 NC_002794.1 + 97863 1.1 0.006169
Target:  5'- cCCGCGGAUUGACGGCGACGUUCGUCAc -3'
miRNA:   3'- -GGCGCCUAACUGCCGCUGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 98366 0.67 0.975103
Target:  5'- gCCGCGcGGcUGGCGGgaGACGUgaucgCGUUg -3'
miRNA:   3'- -GGCGC-CUaACUGCCg-CUGCAa----GCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.