miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 98983 0.72 0.804686
Target:  5'- gCCGUGGccucggUGGuCGGCGGC-UUCGUCAg -3'
miRNA:   3'- -GGCGCCua----ACU-GCCGCUGcAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 99586 0.71 0.868679
Target:  5'- gUGCGGAgggcgcGGCGGCGGCGcgCGcUCGc -3'
miRNA:   3'- gGCGCCUaa----CUGCCGCUGCaaGC-AGU- -5'
10769 5' -53.9 NC_002794.1 + 102550 0.69 0.919827
Target:  5'- gCGUGGA--GACGGCGGCccuggugcugUCGUCGg -3'
miRNA:   3'- gGCGCCUaaCUGCCGCUGca--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 106345 0.67 0.969727
Target:  5'- uUCGcCGGGUcGACGGCgGGCGggCGcCGg -3'
miRNA:   3'- -GGC-GCCUAaCUGCCG-CUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 106378 0.67 0.975103
Target:  5'- gCGCGGAgggcaGACGGCgGGCGaaCGgUCGg -3'
miRNA:   3'- gGCGCCUaa---CUGCCG-CUGCaaGC-AGU- -5'
10769 5' -53.9 NC_002794.1 + 107219 0.66 0.988524
Target:  5'- gCCGCcGGgcGGCGcGCGACGggggcggCGUCGc -3'
miRNA:   3'- -GGCGcCUaaCUGC-CGCUGCaa-----GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 107537 0.67 0.966749
Target:  5'- gCGCGGcgccGGCGGCGACGacCG-CGg -3'
miRNA:   3'- gGCGCCuaa-CUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 108893 0.66 0.985462
Target:  5'- gCGCGGuguacGACGGCGucaaacCGUUCGa-- -3'
miRNA:   3'- gGCGCCuaa--CUGCCGCu-----GCAAGCagu -5'
10769 5' -53.9 NC_002794.1 + 109156 0.66 0.979747
Target:  5'- -gGCGGGggaGAUGGCGACGagCGgCGg -3'
miRNA:   3'- ggCGCCUaa-CUGCCGCUGCaaGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 110143 0.67 0.969727
Target:  5'- aCUGCGGAgaGAgGGUGAgcaCGU-CGUCGc -3'
miRNA:   3'- -GGCGCCUaaCUgCCGCU---GCAaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110263 0.67 0.966749
Target:  5'- gCGCGGcgUcgcGACGGCGGCcgcCGUCc -3'
miRNA:   3'- gGCGCCuaA---CUGCCGCUGcaaGCAGu -5'
10769 5' -53.9 NC_002794.1 + 110338 0.67 0.969727
Target:  5'- gCGCGGGggGucuccgccgUGGCGACGccUCGUCGu -3'
miRNA:   3'- gGCGCCUaaCu--------GCCGCUGCa-AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110532 0.66 0.988243
Target:  5'- gUGCGGGagaacGCGGCGACGacgugcuccgcgUCGUCGc -3'
miRNA:   3'- gGCGCCUaac--UGCCGCUGCa-----------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 110626 0.7 0.889496
Target:  5'- gCCGCGGcgccGCGGCGGCGgg-GUCGg -3'
miRNA:   3'- -GGCGCCuaacUGCCGCUGCaagCAGU- -5'
10769 5' -53.9 NC_002794.1 + 111762 0.66 0.985462
Target:  5'- gCGCGGcgccgucggGGCGGgcuCGUUCGUCAg -3'
miRNA:   3'- gGCGCCuaa------CUGCCgcuGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 112735 0.67 0.977514
Target:  5'- aCGCGGAagGcgcggugcuccGCGGCGGCGgg-GUCGg -3'
miRNA:   3'- gGCGCCUaaC-----------UGCCGCUGCaagCAGU- -5'
10769 5' -53.9 NC_002794.1 + 113168 0.66 0.983714
Target:  5'- gCGCGcgcgGGCGGCGGCGgUCG-CGg -3'
miRNA:   3'- gGCGCcuaaCUGCCGCUGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 114705 0.75 0.669423
Target:  5'- cCUGCGaGAcgGACGGCGGCGgcggcggcuccgggUUCGUCGa -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGC--------------AAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 115403 0.67 0.975103
Target:  5'- gCUGCGGAcuccagUGGCGGCaGAC---CGUCAg -3'
miRNA:   3'- -GGCGCCUa-----ACUGCCG-CUGcaaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 115894 0.67 0.97251
Target:  5'- uCCGCGGAgc-GCGG-GGgGUUCGUgGg -3'
miRNA:   3'- -GGCGCCUaacUGCCgCUgCAAGCAgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.