miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 194930 0.72 0.826714
Target:  5'- gCCGCaccagcuccGACGGCGACG-UCGUCAg -3'
miRNA:   3'- -GGCGccuaa----CUGCCGCUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 192020 0.66 0.98644
Target:  5'- gCCGCGGcugcuguuucugUGGCGGCGGCGgcUGc-- -3'
miRNA:   3'- -GGCGCCua----------ACUGCCGCUGCaaGCagu -5'
10769 5' -53.9 NC_002794.1 + 191672 0.72 0.830005
Target:  5'- gCGcCGGcAgcGGCGGCGGCGUgcccUCGUCGc -3'
miRNA:   3'- gGC-GCC-UaaCUGCCGCUGCA----AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 189854 0.66 0.987063
Target:  5'- gCCGCGGAgccGuCGGCGuCG-UCGcCGc -3'
miRNA:   3'- -GGCGCCUaa-CuGCCGCuGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 183199 0.71 0.882768
Target:  5'- gCCGCcacgccGGCGGCG-CGUUCGUCGc -3'
miRNA:   3'- -GGCGccuaa-CUGCCGCuGCAAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 179679 0.68 0.952774
Target:  5'- cCCGCGGcggcGACGGUGGCGgcggCGaCGg -3'
miRNA:   3'- -GGCGCCuaa-CUGCCGCUGCaa--GCaGU- -5'
10769 5' -53.9 NC_002794.1 + 179115 0.67 0.975103
Target:  5'- uCCGCGGuccgGGCGcGCGGuCGgucgaUCGUCu -3'
miRNA:   3'- -GGCGCCuaa-CUGC-CGCU-GCa----AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 178430 0.69 0.930376
Target:  5'- aCCGCGcGAcgGGCGGUGACGccgUGUUu -3'
miRNA:   3'- -GGCGC-CUaaCUGCCGCUGCaa-GCAGu -5'
10769 5' -53.9 NC_002794.1 + 166248 0.72 0.821728
Target:  5'- aCGUGGAagugUGugGGCGGCGgccaUCGUg- -3'
miRNA:   3'- gGCGCCUa---ACugCCGCUGCa---AGCAgu -5'
10769 5' -53.9 NC_002794.1 + 154611 0.68 0.948742
Target:  5'- gCGCGGAUcGAUaGGgGACGUggggcuccagUCGUCu -3'
miRNA:   3'- gGCGCCUAaCUG-CCgCUGCA----------AGCAGu -5'
10769 5' -53.9 NC_002794.1 + 154375 0.68 0.95238
Target:  5'- gCCGCGGc--GGCGGCGGgcacgccCGUUCG-CGu -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCU-------GCAAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 150805 0.67 0.967964
Target:  5'- cCCGCGGcg-GACGGCcGAgccgcuggagcugauCG-UCGUCAg -3'
miRNA:   3'- -GGCGCCuaaCUGCCG-CU---------------GCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 149496 0.77 0.543249
Target:  5'- cUCGgGGAUgggGAUGGUGACGgggUCGUCGc -3'
miRNA:   3'- -GGCgCCUAa--CUGCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 146751 0.66 0.985462
Target:  5'- gCCGCGGAUcggggGAgGGaCGAUGgUCG-CAa -3'
miRNA:   3'- -GGCGCCUAa----CUgCC-GCUGCaAGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 143712 0.67 0.975103
Target:  5'- aCCGCGGGccc-CGGCGgGCG-UCGUCc -3'
miRNA:   3'- -GGCGCCUaacuGCCGC-UGCaAGCAGu -5'
10769 5' -53.9 NC_002794.1 + 142947 0.66 0.983714
Target:  5'- gCCGaGGGgaaGuCGGCGGCGUcgagcuccUCGUCGa -3'
miRNA:   3'- -GGCgCCUaa-CuGCCGCUGCA--------AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 141368 0.7 0.896007
Target:  5'- gCgGCGGAgaGaACGGCGAcCGUcCGUCGu -3'
miRNA:   3'- -GgCGCCUaaC-UGCCGCU-GCAaGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 140177 0.68 0.952774
Target:  5'- --uUGGAUcgGGuCGGCGACGgcgUCGUCGa -3'
miRNA:   3'- ggcGCCUAa-CU-GCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 138666 0.74 0.731203
Target:  5'- uCUGCGGAUUGGucugcgUGGCGGCGggUCGUg- -3'
miRNA:   3'- -GGCGCCUAACU------GCCGCUGCa-AGCAgu -5'
10769 5' -53.9 NC_002794.1 + 138437 0.74 0.711842
Target:  5'- gCCGCGG--UGGCGGCGGCGccUCGg-- -3'
miRNA:   3'- -GGCGCCuaACUGCCGCUGCa-AGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.