miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10769 5' -53.9 NC_002794.1 + 138099 0.68 0.960183
Target:  5'- gCgGCGGAccgucugcagGAgGGCGugGUgcUCGUCGc -3'
miRNA:   3'- -GgCGCCUaa--------CUgCCGCugCA--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 137327 0.74 0.750238
Target:  5'- uCCGCGGAagguuccgcgGACGGCucGGCG-UCGUCGg -3'
miRNA:   3'- -GGCGCCUaa--------CUGCCG--CUGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 136958 0.73 0.778023
Target:  5'- cCCGCaGGg--GACGGUGACGagcUCGUCGc -3'
miRNA:   3'- -GGCG-CCuaaCUGCCGCUGCa--AGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 136088 0.67 0.969727
Target:  5'- aCGCGGGggaGGCGuaGACGUcggCGUCc -3'
miRNA:   3'- gGCGCCUaa-CUGCcgCUGCAa--GCAGu -5'
10769 5' -53.9 NC_002794.1 + 135467 0.66 0.987063
Target:  5'- cCCGCGGcc-GACGaCGACGccgcCGUCGa -3'
miRNA:   3'- -GGCGCCuaaCUGCcGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 129933 0.68 0.948742
Target:  5'- gCCGUGGc--GACGGCGGCGgcggCGg-- -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaa--GCagu -5'
10769 5' -53.9 NC_002794.1 + 129047 0.73 0.75961
Target:  5'- uCUGCGGucgUGGCGcGCGACGgugUGUCGc -3'
miRNA:   3'- -GGCGCCua-ACUGC-CGCUGCaa-GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 128172 0.74 0.750238
Target:  5'- gCCGCGGAcgGGuCGGUGACc-UCGUCGg -3'
miRNA:   3'- -GGCGCCUaaCU-GCCGCUGcaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 125749 0.7 0.889496
Target:  5'- gCCGCGGGacGGCGGCcGGCGgcUCGcCAc -3'
miRNA:   3'- -GGCGCCUaaCUGCCG-CUGCa-AGCaGU- -5'
10769 5' -53.9 NC_002794.1 + 124021 0.72 0.821728
Target:  5'- gCCGCGGAagaGACGGUGGcCGUcUGUCu -3'
miRNA:   3'- -GGCGCCUaa-CUGCCGCU-GCAaGCAGu -5'
10769 5' -53.9 NC_002794.1 + 121592 0.66 0.985462
Target:  5'- gCGCGGGgucguuCGGCGACGauUUCGaagUCAu -3'
miRNA:   3'- gGCGCCUaacu--GCCGCUGC--AAGC---AGU- -5'
10769 5' -53.9 NC_002794.1 + 120065 0.77 0.547147
Target:  5'- gCCGCGGAggccgacgcggcggUGGCGGCGACGacCGUg- -3'
miRNA:   3'- -GGCGCCUa-------------ACUGCCGCUGCaaGCAgu -5'
10769 5' -53.9 NC_002794.1 + 120030 0.66 0.979747
Target:  5'- cUCGCGGGgacgucgucaUGACGGCGGCGguggCGn-- -3'
miRNA:   3'- -GGCGCCUa---------ACUGCCGCUGCaa--GCagu -5'
10769 5' -53.9 NC_002794.1 + 119431 0.68 0.952774
Target:  5'- cUCGCaGGUccGACGGCGGCGgcgguggcggCGUCGa -3'
miRNA:   3'- -GGCGcCUAa-CUGCCGCUGCaa--------GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 118249 0.67 0.974345
Target:  5'- uCgGCGGGcuggaggucggccggGGCGGCGGCGccggCGUCGg -3'
miRNA:   3'- -GgCGCCUaa-------------CUGCCGCUGCaa--GCAGU- -5'
10769 5' -53.9 NC_002794.1 + 116130 0.68 0.948742
Target:  5'- gCCGCGGc--GGCGGCGGCGg-CGg-- -3'
miRNA:   3'- -GGCGCCuaaCUGCCGCUGCaaGCagu -5'
10769 5' -53.9 NC_002794.1 + 116074 0.7 0.914211
Target:  5'- gUCGCGGAgcgcuCGGCGcgGCGgUCGUCGc -3'
miRNA:   3'- -GGCGCCUaacu-GCCGC--UGCaAGCAGU- -5'
10769 5' -53.9 NC_002794.1 + 116005 0.68 0.948742
Target:  5'- aCCGCGGAgaccGCGGUGGCGaUUGgcgCGg -3'
miRNA:   3'- -GGCGCCUaac-UGCCGCUGCaAGCa--GU- -5'
10769 5' -53.9 NC_002794.1 + 115894 0.67 0.97251
Target:  5'- uCCGCGGAgc-GCGG-GGgGUUCGUgGg -3'
miRNA:   3'- -GGCGCCUaacUGCCgCUgCAAGCAgU- -5'
10769 5' -53.9 NC_002794.1 + 115403 0.67 0.975103
Target:  5'- gCUGCGGAcuccagUGGCGGCaGAC---CGUCAg -3'
miRNA:   3'- -GGCGCCUa-----ACUGCCG-CUGcaaGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.