miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1077 5' -55.8 NC_000929.1 + 16692 0.66 0.517321
Target:  5'- cCGCGaagugGAUGCCGGUacggaugaaaGCACcGGAGAGa -3'
miRNA:   3'- cGUGCa----CUACGGUCG----------CGUGuCCUCUU- -5'
1077 5' -55.8 NC_000929.1 + 30178 0.67 0.474214
Target:  5'- aGCACGc--UGCCAGCGUguaccgGCAGGAa-- -3'
miRNA:   3'- -CGUGCacuACGGUCGCG------UGUCCUcuu -5'
1077 5' -55.8 NC_000929.1 + 20592 0.69 0.33129
Target:  5'- cGUACGUGuauaGCgGGCGCACAGGu--- -3'
miRNA:   3'- -CGUGCACua--CGgUCGCGUGUCCucuu -5'
1077 5' -55.8 NC_000929.1 + 14821 1.08 0.000488
Target:  5'- gGCACGUGAUGCCAGCGCACAGGAGAAa -3'
miRNA:   3'- -CGUGCACUACGGUCGCGUGUCCUCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.