miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 150034 0.66 0.949911
Target:  5'- gGCCGCCGaguGGAgCcGCUACCGacuGCGGu -3'
miRNA:   3'- aUGGUGGU---CCU-GuCGAUGGCgu-UGCU- -5'
10770 3' -55.4 NC_002794.1 + 17273 0.66 0.949911
Target:  5'- -gUCACCcGGGCAcGCcGCCGcCGACGGu -3'
miRNA:   3'- auGGUGGuCCUGU-CGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 9095 0.66 0.949911
Target:  5'- gGCgACCGGGAgCAGCaACaGCAGCa- -3'
miRNA:   3'- aUGgUGGUCCU-GUCGaUGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 69731 0.66 0.949911
Target:  5'- gUGCCGCCGgagcgccacGGcCGGCgacGCCGCGGgGAu -3'
miRNA:   3'- -AUGGUGGU---------CCuGUCGa--UGGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 86331 0.66 0.949911
Target:  5'- gACCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 126545 0.66 0.949911
Target:  5'- cUACUgACCGGGaACAccGUcGCCGCGGCGGu -3'
miRNA:   3'- -AUGG-UGGUCC-UGU--CGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 25492 0.66 0.949911
Target:  5'- aUACCACCAGauuuGAUcGCaaccaACCGCGACGc -3'
miRNA:   3'- -AUGGUGGUC----CUGuCGa----UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 105925 0.66 0.949911
Target:  5'- cGCCGCCGccGGACgGGCUggACgCGCuguACGAa -3'
miRNA:   3'- aUGGUGGU--CCUG-UCGA--UG-GCGu--UGCU- -5'
10770 3' -55.4 NC_002794.1 + 103848 0.66 0.949494
Target:  5'- gACCACCGagcGGGCcGCcGCCgacgagaGCGACGAg -3'
miRNA:   3'- aUGGUGGU---CCUGuCGaUGG-------CGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 182789 0.66 0.947372
Target:  5'- cACCuGCCAGcgcacggucgcggucGACAGCUcguccaGCCGCGGCa- -3'
miRNA:   3'- aUGG-UGGUC---------------CUGUCGA------UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 129925 0.66 0.945632
Target:  5'- -uUCGCCAGGccguggcgACGGCgGCgGCGGCGGc -3'
miRNA:   3'- auGGUGGUCC--------UGUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 82755 0.66 0.945632
Target:  5'- cACCGCCGcGGACucGCU-CCGCGAa-- -3'
miRNA:   3'- aUGGUGGU-CCUGu-CGAuGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 194129 0.66 0.945632
Target:  5'- cACgGCUGaGGCAGCgGCCGCAGCa- -3'
miRNA:   3'- aUGgUGGUcCUGUCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 187068 0.66 0.945632
Target:  5'- -cCCGCCAGGugccgcaGGCUGCuCGCcACGu -3'
miRNA:   3'- auGGUGGUCCug-----UCGAUG-GCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 26641 0.66 0.945632
Target:  5'- cGCgCACCcGGACGGCgGCCGgcucguCGGCGGg -3'
miRNA:   3'- aUG-GUGGuCCUGUCGaUGGC------GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 60778 0.66 0.945632
Target:  5'- cGCCGCCGucgaacGGACGGCUcggACCaUGACGGc -3'
miRNA:   3'- aUGGUGGU------CCUGUCGA---UGGcGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 115311 0.66 0.945632
Target:  5'- cGCCGCCGuccGcACGGUcGCCGCGGCGu -3'
miRNA:   3'- aUGGUGGU---CcUGUCGaUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 68766 0.66 0.944303
Target:  5'- gGCCGCCGGGGCgccggacgcccGGCUcUCGCGccccggcuaacaggACGAc -3'
miRNA:   3'- aUGGUGGUCCUG-----------UCGAuGGCGU--------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 134459 0.66 0.942952
Target:  5'- gUGCCccuUCGGGACGGCgcucucgucgccagACCGCG-CGAc -3'
miRNA:   3'- -AUGGu--GGUCCUGUCGa-------------UGGCGUuGCU- -5'
10770 3' -55.4 NC_002794.1 + 44737 0.66 0.941119
Target:  5'- cGCCGCC-GGAgGGCUaagACgGCGACu- -3'
miRNA:   3'- aUGGUGGuCCUgUCGA---UGgCGUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.