miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 44737 0.66 0.941119
Target:  5'- cGCCGCC-GGAgGGCUaagACgGCGACu- -3'
miRNA:   3'- aUGGUGGuCCUgUCGA---UGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 68766 0.66 0.944303
Target:  5'- gGCCGCCGGGGCgccggacgcccGGCUcUCGCGccccggcuaacaggACGAc -3'
miRNA:   3'- aUGGUGGUCCUG-----------UCGAuGGCGU--------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 134459 0.66 0.942952
Target:  5'- gUGCCccuUCGGGACGGCgcucucgucgccagACCGCG-CGAc -3'
miRNA:   3'- -AUGGu--GGUCCUGUCGa-------------UGGCGUuGCU- -5'
10770 3' -55.4 NC_002794.1 + 135456 0.66 0.941119
Target:  5'- gGCUcCCGGGGCccGCgGCCGaCGACGAc -3'
miRNA:   3'- aUGGuGGUCCUGu-CGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 129925 0.66 0.945632
Target:  5'- -uUCGCCAGGccguggcgACGGCgGCgGCGGCGGc -3'
miRNA:   3'- auGGUGGUCC--------UGUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 82755 0.66 0.945632
Target:  5'- cACCGCCGcGGACucGCU-CCGCGAa-- -3'
miRNA:   3'- aUGGUGGU-CCUGu-CGAuGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 194129 0.66 0.945632
Target:  5'- cACgGCUGaGGCAGCgGCCGCAGCa- -3'
miRNA:   3'- aUGgUGGUcCUGUCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 187068 0.66 0.945632
Target:  5'- -cCCGCCAGGugccgcaGGCUGCuCGCcACGu -3'
miRNA:   3'- auGGUGGUCCug-----UCGAUG-GCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 48482 0.67 0.909065
Target:  5'- aGCCGCCGGG-CAGCgcCCaCGACa- -3'
miRNA:   3'- aUGGUGGUCCuGUCGauGGcGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48249 0.67 0.909065
Target:  5'- gGCCGCagCAGGAuCAGC--CCGCAGCa- -3'
miRNA:   3'- aUGGUG--GUCCU-GUCGauGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 194707 0.67 0.909065
Target:  5'- aACCACgcgCAGcACAGCcGCCGCGucACGAa -3'
miRNA:   3'- aUGGUG---GUCcUGUCGaUGGCGU--UGCU- -5'
10770 3' -55.4 NC_002794.1 + 111637 0.67 0.902895
Target:  5'- cGCCGCCGgucGGGCGccGCgGCCGCGGCc- -3'
miRNA:   3'- aUGGUGGU---CCUGU--CGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 33289 0.67 0.908459
Target:  5'- gACCACCAGGaguaucuGCGGCU-CUggGCGGCGu -3'
miRNA:   3'- aUGGUGGUCC-------UGUCGAuGG--CGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 56766 0.67 0.909065
Target:  5'- gGCCAucuUCGGGAUcuacuGCaGCCGCAugGAa -3'
miRNA:   3'- aUGGU---GGUCCUGu----CGaUGGCGUugCU- -5'
10770 3' -55.4 NC_002794.1 + 82380 0.67 0.915001
Target:  5'- cACCGCC---GCGGCggACCGCGGCGc -3'
miRNA:   3'- aUGGUGGuccUGUCGa-UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 111320 0.67 0.909065
Target:  5'- --aCGCCGGGcCAGCggcgcggGCCGCAgaucugccggACGAa -3'
miRNA:   3'- augGUGGUCCuGUCGa------UGGCGU----------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 86475 0.67 0.915001
Target:  5'- gACCgaGCCGGGACGgauGCUccggaccgaGCCGgGACGGa -3'
miRNA:   3'- aUGG--UGGUCCUGU---CGA---------UGGCgUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 20160 0.67 0.915001
Target:  5'- cGCCGCCuGG-CGGCcccaUACCGCGA-GAg -3'
miRNA:   3'- aUGGUGGuCCuGUCG----AUGGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 44269 0.67 0.9207
Target:  5'- gGCCGCCgGGGACGGaggaguCCGCGcccgccgggccgGCGAg -3'
miRNA:   3'- aUGGUGG-UCCUGUCgau---GGCGU------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 118807 0.67 0.902895
Target:  5'- -cCCGCUuGGGCuuGCUGCC-CGACGAg -3'
miRNA:   3'- auGGUGGuCCUGu-CGAUGGcGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.