Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10770 | 3' | -55.4 | NC_002794.1 | + | 191658 | 0.73 | 0.637178 |
Target: 5'- -cCCGCCggGGGACGGC-GCCgGCAGCGGc -3' miRNA: 3'- auGGUGG--UCCUGUCGaUGG-CGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 137577 | 0.73 | 0.606555 |
Target: 5'- cGCCGCCGGGGCcggagugcggggAGCcGCCGcCGGCGGu -3' miRNA: 3'- aUGGUGGUCCUG------------UCGaUGGC-GUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 110303 | 0.73 | 0.637178 |
Target: 5'- aGCCGCgGGGACucuccGCUcgccGCCGCGACGc -3' miRNA: 3'- aUGGUGgUCCUGu----CGA----UGGCGUUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 143048 | 0.73 | 0.616754 |
Target: 5'- gGCCGCCAGGuugaggccgUAGCgcCCGCGGCGGc -3' miRNA: 3'- aUGGUGGUCCu--------GUCGauGGCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 184025 | 0.73 | 0.635135 |
Target: 5'- gGCCGCCAcGGcaccgcgcGCAGCgcgcggucgcggGCCGCGGCGAa -3' miRNA: 3'- aUGGUGGU-CC--------UGUCGa-----------UGGCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 118511 | 0.72 | 0.698089 |
Target: 5'- gGCCgACCAGGACcgcccGCUGCUGCu-CGAg -3' miRNA: 3'- aUGG-UGGUCCUGu----CGAUGGCGuuGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 61514 | 0.72 | 0.657586 |
Target: 5'- -cCCGCC-GGACGGCgGCCGcCGGCGGc -3' miRNA: 3'- auGGUGGuCCUGUCGaUGGC-GUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 58012 | 0.72 | 0.677912 |
Target: 5'- cGCCGCCGGGGCcGCcGCCG--GCGAa -3' miRNA: 3'- aUGGUGGUCCUGuCGaUGGCguUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 78726 | 0.72 | 0.688024 |
Target: 5'- --gCACCAGGaACAGaUACCGCGACa- -3' miRNA: 3'- augGUGGUCC-UGUCgAUGGCGUUGcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 101567 | 0.72 | 0.698089 |
Target: 5'- cGCCGgCGGGAguGCcgGCCGCcGCGGc -3' miRNA: 3'- aUGGUgGUCCUguCGa-UGGCGuUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 37742 | 0.72 | 0.647388 |
Target: 5'- cGCCGCCGGcGGCGGC-GCgGCGGCGc -3' miRNA: 3'- aUGGUGGUC-CUGUCGaUGgCGUUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 61554 | 0.72 | 0.698089 |
Target: 5'- cGCCGCCGcGGCGGCgGCCGCcguCGAa -3' miRNA: 3'- aUGGUGGUcCUGUCGaUGGCGuu-GCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 112853 | 0.72 | 0.667764 |
Target: 5'- gGCgCGCCGcaGCAGCUGCUGCAGCGc -3' miRNA: 3'- aUG-GUGGUccUGUCGAUGGCGUUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 95825 | 0.72 | 0.698089 |
Target: 5'- gGCgGCCGGGGgAGCgGCgGCGGCGGc -3' miRNA: 3'- aUGgUGGUCCUgUCGaUGgCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 117975 | 0.71 | 0.7081 |
Target: 5'- gGCCACCAgcuGGugGuacagcagggGCUGCCGCGGCa- -3' miRNA: 3'- aUGGUGGU---CCugU----------CGAUGGCGUUGcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 82037 | 0.71 | 0.7081 |
Target: 5'- gAUCGCguGGGCGGCgGCgGCGGCGGc -3' miRNA: 3'- aUGGUGguCCUGUCGaUGgCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 179663 | 0.71 | 0.727919 |
Target: 5'- gGCuCGCC-GGACGGCacCCGCGGCGGc -3' miRNA: 3'- aUG-GUGGuCCUGUCGauGGCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 117287 | 0.71 | 0.718046 |
Target: 5'- -cCCugCGcGGACAGCUGCgGCGuguCGAg -3' miRNA: 3'- auGGugGU-CCUGUCGAUGgCGUu--GCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 189409 | 0.71 | 0.737709 |
Target: 5'- -uCCGCCAGGGCcagcggguucuGCUGCCGCAGg-- -3' miRNA: 3'- auGGUGGUCCUGu----------CGAUGGCGUUgcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 74089 | 0.71 | 0.737709 |
Target: 5'- cGCCGagUCGGGACAGCUGCgGCuGCu- -3' miRNA: 3'- aUGGU--GGUCCUGUCGAUGgCGuUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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