miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 97367 1.07 0.004761
Target:  5'- uUACCACCAGGACAGCUACCGCAACGAg -3'
miRNA:   3'- -AUGGUGGUCCUGUCGAUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 70644 0.79 0.307172
Target:  5'- cGCCACCAGGuucuuggccucgugcGCGGCggccGCCGCGGCGGu -3'
miRNA:   3'- aUGGUGGUCC---------------UGUCGa---UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 43628 0.78 0.356465
Target:  5'- gGCCGCCAGGAgcugguggaaCAcGCUGCCGCcgAACGAg -3'
miRNA:   3'- aUGGUGGUCCU----------GU-CGAUGGCG--UUGCU- -5'
10770 3' -55.4 NC_002794.1 + 185468 0.78 0.364401
Target:  5'- --aCGCCGcGGGCGGCgGCCGCGGCGAg -3'
miRNA:   3'- augGUGGU-CCUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 148141 0.76 0.441131
Target:  5'- gGCCGCCGGGGCgagGGCggUCGCGACGGa -3'
miRNA:   3'- aUGGUGGUCCUG---UCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 36363 0.76 0.468675
Target:  5'- gGCCACCGGGuGC-GCgcCCGCGGCGAa -3'
miRNA:   3'- aUGGUGGUCC-UGuCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 192861 0.76 0.468675
Target:  5'- aGCacgaACCAGcGGCAGCacaGCCGCGACGAg -3'
miRNA:   3'- aUGg---UGGUC-CUGUCGa--UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 108152 0.75 0.506712
Target:  5'- cGCCGCCGGGAgcgcCGGCgcgaagacGCCGCGACGc -3'
miRNA:   3'- aUGGUGGUCCU----GUCGa-------UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 63655 0.75 0.525239
Target:  5'- gACCGCCAacgucucGGACgacgAGCgcgGCCGCGGCGAc -3'
miRNA:   3'- aUGGUGGU-------CCUG----UCGa--UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 195256 0.75 0.526221
Target:  5'- gACCACCccGGCGGggACUGCAGCGAc -3'
miRNA:   3'- aUGGUGGucCUGUCgaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 26081 0.75 0.526221
Target:  5'- cGCCACgCGGGGCAGCgccgacgGCCcCGGCGAu -3'
miRNA:   3'- aUGGUG-GUCCUGUCGa------UGGcGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 49396 0.74 0.536081
Target:  5'- cGCCGCCGucGGccACGGCgGCCGCGGCGGc -3'
miRNA:   3'- aUGGUGGU--CC--UGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 107218 0.74 0.536081
Target:  5'- cGCCGCCGGG-CGGCg--CGCGACGGg -3'
miRNA:   3'- aUGGUGGUCCuGUCGaugGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 86855 0.74 0.536081
Target:  5'- -cCCGCCGGGAUugGGuCUGCCGCGGCu- -3'
miRNA:   3'- auGGUGGUCCUG--UC-GAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 121386 0.74 0.54501
Target:  5'- cGCCGCCGGGACcgcggccGGCgccgggACCGCGACc- -3'
miRNA:   3'- aUGGUGGUCCUG-------UCGa-----UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 95756 0.74 0.555987
Target:  5'- gUACUcgCGGGGCGGCgGCCGCGACGGc -3'
miRNA:   3'- -AUGGugGUCCUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 66847 0.74 0.555987
Target:  5'- cGCCGCCGucGGcGCGGCgagGCCGCGGCGu -3'
miRNA:   3'- aUGGUGGU--CC-UGUCGa--UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 49800 0.74 0.555987
Target:  5'- aGCCgaGCCAGGAgCAGCUcCCGCGGCc- -3'
miRNA:   3'- aUGG--UGGUCCU-GUCGAuGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 20978 0.74 0.586222
Target:  5'- cACCGgCAGcGGCGGCggcagcgACCGCGGCGGc -3'
miRNA:   3'- aUGGUgGUC-CUGUCGa------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 114358 0.73 0.596376
Target:  5'- cGCCGCCAGGGcCGGCUGCaggGCcGCGu -3'
miRNA:   3'- aUGGUGGUCCU-GUCGAUGg--CGuUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.