miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 137577 0.73 0.606555
Target:  5'- cGCCGCCGGGGCcggagugcggggAGCcGCCGcCGGCGGu -3'
miRNA:   3'- aUGGUGGUCCUG------------UCGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 143048 0.73 0.616754
Target:  5'- gGCCGCCAGGuugaggccgUAGCgcCCGCGGCGGc -3'
miRNA:   3'- aUGGUGGUCCu--------GUCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 184025 0.73 0.635135
Target:  5'- gGCCGCCAcGGcaccgcgcGCAGCgcgcggucgcggGCCGCGGCGAa -3'
miRNA:   3'- aUGGUGGU-CC--------UGUCGa-----------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 110303 0.73 0.637178
Target:  5'- aGCCGCgGGGACucuccGCUcgccGCCGCGACGc -3'
miRNA:   3'- aUGGUGgUCCUGu----CGA----UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 191658 0.73 0.637178
Target:  5'- -cCCGCCggGGGACGGC-GCCgGCAGCGGc -3'
miRNA:   3'- auGGUGG--UCCUGUCGaUGG-CGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 37742 0.72 0.647388
Target:  5'- cGCCGCCGGcGGCGGC-GCgGCGGCGc -3'
miRNA:   3'- aUGGUGGUC-CUGUCGaUGgCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 61514 0.72 0.657586
Target:  5'- -cCCGCC-GGACGGCgGCCGcCGGCGGc -3'
miRNA:   3'- auGGUGGuCCUGUCGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 112853 0.72 0.667764
Target:  5'- gGCgCGCCGcaGCAGCUGCUGCAGCGc -3'
miRNA:   3'- aUG-GUGGUccUGUCGAUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 58012 0.72 0.677912
Target:  5'- cGCCGCCGGGGCcGCcGCCG--GCGAa -3'
miRNA:   3'- aUGGUGGUCCUGuCGaUGGCguUGCU- -5'
10770 3' -55.4 NC_002794.1 + 78726 0.72 0.688024
Target:  5'- --gCACCAGGaACAGaUACCGCGACa- -3'
miRNA:   3'- augGUGGUCC-UGUCgAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 118511 0.72 0.698089
Target:  5'- gGCCgACCAGGACcgcccGCUGCUGCu-CGAg -3'
miRNA:   3'- aUGG-UGGUCCUGu----CGAUGGCGuuGCU- -5'
10770 3' -55.4 NC_002794.1 + 101567 0.72 0.698089
Target:  5'- cGCCGgCGGGAguGCcgGCCGCcGCGGc -3'
miRNA:   3'- aUGGUgGUCCUguCGa-UGGCGuUGCU- -5'
10770 3' -55.4 NC_002794.1 + 95825 0.72 0.698089
Target:  5'- gGCgGCCGGGGgAGCgGCgGCGGCGGc -3'
miRNA:   3'- aUGgUGGUCCUgUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 61554 0.72 0.698089
Target:  5'- cGCCGCCGcGGCGGCgGCCGCcguCGAa -3'
miRNA:   3'- aUGGUGGUcCUGUCGaUGGCGuu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 117975 0.71 0.7081
Target:  5'- gGCCACCAgcuGGugGuacagcagggGCUGCCGCGGCa- -3'
miRNA:   3'- aUGGUGGU---CCugU----------CGAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 82037 0.71 0.7081
Target:  5'- gAUCGCguGGGCGGCgGCgGCGGCGGc -3'
miRNA:   3'- aUGGUGguCCUGUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 93834 0.71 0.718046
Target:  5'- gGCCAUCGccgagaucauGGACGGCcGCgGCGGCGAg -3'
miRNA:   3'- aUGGUGGU----------CCUGUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 56266 0.71 0.718046
Target:  5'- gGCCACCGGGccgaGCAGCagGCgGCAgagcACGAu -3'
miRNA:   3'- aUGGUGGUCC----UGUCGa-UGgCGU----UGCU- -5'
10770 3' -55.4 NC_002794.1 + 117287 0.71 0.718046
Target:  5'- -cCCugCGcGGACAGCUGCgGCGuguCGAg -3'
miRNA:   3'- auGGugGU-CCUGUCGAUGgCGUu--GCU- -5'
10770 3' -55.4 NC_002794.1 + 179663 0.71 0.727919
Target:  5'- gGCuCGCC-GGACGGCacCCGCGGCGGc -3'
miRNA:   3'- aUG-GUGGuCCUGUCGauGGCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.