miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 65229 0.71 0.727919
Target:  5'- -uCCACgGGcGGCGGUcGCCGCGGCGGc -3'
miRNA:   3'- auGGUGgUC-CUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 74089 0.71 0.737709
Target:  5'- cGCCGagUCGGGACAGCUGCgGCuGCu- -3'
miRNA:   3'- aUGGU--GGUCCUGUCGAUGgCGuUGcu -5'
10770 3' -55.4 NC_002794.1 + 91767 0.71 0.737709
Target:  5'- cACCGCgCAGGACgGGCUGCUGaagGCGGu -3'
miRNA:   3'- aUGGUG-GUCCUG-UCGAUGGCgu-UGCU- -5'
10770 3' -55.4 NC_002794.1 + 189409 0.71 0.737709
Target:  5'- -uCCGCCAGGGCcagcggguucuGCUGCCGCAGg-- -3'
miRNA:   3'- auGGUGGUCCUGu----------CGAUGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 191995 0.71 0.747408
Target:  5'- gACgGCCGGGACGGUagcggcggugGCCGCGGCu- -3'
miRNA:   3'- aUGgUGGUCCUGUCGa---------UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 86727 0.71 0.747408
Target:  5'- gGCCACCuAGaGCcgAGCcgACCGCGACGAg -3'
miRNA:   3'- aUGGUGG-UCcUG--UCGa-UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 16875 0.71 0.747408
Target:  5'- cGCCGCCGcGGCAGCaaccaccGCCGCcGCGAc -3'
miRNA:   3'- aUGGUGGUcCUGUCGa------UGGCGuUGCU- -5'
10770 3' -55.4 NC_002794.1 + 91853 0.71 0.75126
Target:  5'- cACCGucaaguucgagggucCCGGGggugGCGGCggcgGCCGCGACGAg -3'
miRNA:   3'- aUGGU---------------GGUCC----UGUCGa---UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 186273 0.7 0.757006
Target:  5'- cACCGCCuGGcGCGGCggcACCGCGGCc- -3'
miRNA:   3'- aUGGUGGuCC-UGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 148085 0.7 0.757006
Target:  5'- gGCCucgaGCgAGGAgCAGCUGCCGCucaagaAGCGAc -3'
miRNA:   3'- aUGG----UGgUCCU-GUCGAUGGCG------UUGCU- -5'
10770 3' -55.4 NC_002794.1 + 8111 0.7 0.762713
Target:  5'- cGCCACCGagcGGGCGGCggccuccucggugACCGgCGACGGc -3'
miRNA:   3'- aUGGUGGU---CCUGUCGa------------UGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 58172 0.7 0.766495
Target:  5'- cGCCGCCAGGA--GgUGCCGCGcaccaccaACGAg -3'
miRNA:   3'- aUGGUGGUCCUguCgAUGGCGU--------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 44702 0.7 0.766495
Target:  5'- cGCCGCCcGG-CcGCgACCGCGGCGAc -3'
miRNA:   3'- aUGGUGGuCCuGuCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 190744 0.7 0.766495
Target:  5'- cGCCGCCgucucgacgGGGGCGGCgGCCGC-GCGu -3'
miRNA:   3'- aUGGUGG---------UCCUGUCGaUGGCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 85553 0.7 0.784188
Target:  5'- gGCC-CCGGGACGGCUuccugccACgCGCGACc- -3'
miRNA:   3'- aUGGuGGUCCUGUCGA-------UG-GCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48879 0.7 0.785106
Target:  5'- gGCgGCCAGGugGcaggccagcGUUGCCGCAGCu- -3'
miRNA:   3'- aUGgUGGUCCugU---------CGAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 55262 0.7 0.785106
Target:  5'- cGCCgaagaGCCggGGGGCGGCggugGCgGCGACGAg -3'
miRNA:   3'- aUGG-----UGG--UCCUGUCGa---UGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 113917 0.7 0.785106
Target:  5'- gGCCuCCAGGuCGGCcGCCgagGCGACGGg -3'
miRNA:   3'- aUGGuGGUCCuGUCGaUGG---CGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 188402 0.7 0.785106
Target:  5'- cGCCGCagaCGGGACcGCcGCCGCAACu- -3'
miRNA:   3'- aUGGUG---GUCCUGuCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 112722 0.7 0.793306
Target:  5'- cUGCCcguCCAGGACGcggaaggcgcgguGCU-CCGCGGCGGc -3'
miRNA:   3'- -AUGGu--GGUCCUGU-------------CGAuGGCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.