miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 14774 0.66 0.941119
Target:  5'- gGCCGCUgaggccggcgAGGcCGGCgugACCGCGACc- -3'
miRNA:   3'- aUGGUGG----------UCCuGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 34722 0.66 0.941119
Target:  5'- cGCCACgAGGcGCgGGCgGCCGCAgagcgcGCGAc -3'
miRNA:   3'- aUGGUGgUCC-UG-UCGaUGGCGU------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 22894 0.66 0.941119
Target:  5'- gGCCuCCcguugguGGACGGCggcgACCGCGGCc- -3'
miRNA:   3'- aUGGuGGu------CCUGUCGa---UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 68379 0.66 0.941119
Target:  5'- cGCCGCCccccGACcuGCU-CCGCGACGGc -3'
miRNA:   3'- aUGGUGGuc--CUGu-CGAuGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 44737 0.66 0.941119
Target:  5'- cGCCGCC-GGAgGGCUaagACgGCGACu- -3'
miRNA:   3'- aUGGUGGuCCUgUCGA---UGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 135456 0.66 0.941119
Target:  5'- gGCUcCCGGGGCccGCgGCCGaCGACGAc -3'
miRNA:   3'- aUGGuGGUCCUGu-CGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 1430 0.66 0.936371
Target:  5'- gACgACCGGGAgGGggACCGgGGCGc -3'
miRNA:   3'- aUGgUGGUCCUgUCgaUGGCgUUGCu -5'
10770 3' -55.4 NC_002794.1 + 86187 0.66 0.936371
Target:  5'- gGCCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 187214 0.66 0.936371
Target:  5'- gACCAucuCCAGcGGCuccGGCUgGCCGCAGCa- -3'
miRNA:   3'- aUGGU---GGUC-CUG---UCGA-UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 70734 0.66 0.936371
Target:  5'- cGCCACCAGGAgCAGCgcgagcCCGgGAa-- -3'
miRNA:   3'- aUGGUGGUCCU-GUCGau----GGCgUUgcu -5'
10770 3' -55.4 NC_002794.1 + 72283 0.66 0.936371
Target:  5'- aGCCGCgaaagCGGGcgaucgcgucccGCAGCUGCCGCAGa-- -3'
miRNA:   3'- aUGGUG-----GUCC------------UGUCGAUGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 71349 0.66 0.936371
Target:  5'- -uCCGCCAGGcggcGCAGCaggUGCgGCAGCc- -3'
miRNA:   3'- auGGUGGUCC----UGUCG---AUGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 86547 0.66 0.936371
Target:  5'- gGCCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 86379 0.66 0.936371
Target:  5'- gGCCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 118206 0.66 0.936371
Target:  5'- cGCCGCCGucgccucgcGGACGGCca-CGCAGCu- -3'
miRNA:   3'- aUGGUGGU---------CCUGUCGaugGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 138949 0.66 0.936371
Target:  5'- -cCCACCGuGGCGuGCUGCgaCGCGGCGGa -3'
miRNA:   3'- auGGUGGUcCUGU-CGAUG--GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 184969 0.66 0.931385
Target:  5'- aGCCGCUcgucGGGCAGCa--CGCAGCGc -3'
miRNA:   3'- aUGGUGGu---CCUGUCGaugGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 194524 0.66 0.931385
Target:  5'- gUGCCGCCGGcccaGCAGC-GCCGcCAGCa- -3'
miRNA:   3'- -AUGGUGGUCc---UGUCGaUGGC-GUUGcu -5'
10770 3' -55.4 NC_002794.1 + 181569 0.66 0.931385
Target:  5'- gGCCAaUCAGGAUcgacaGGCUgcggGCCGCGACc- -3'
miRNA:   3'- aUGGU-GGUCCUG-----UCGA----UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 175416 0.66 0.931385
Target:  5'- --aCGCC-GGugAGCgaUGCCGCGGCGc -3'
miRNA:   3'- augGUGGuCCugUCG--AUGGCGUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.