miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 181569 0.66 0.931385
Target:  5'- gGCCAaUCAGGAUcgacaGGCUgcggGCCGCGACc- -3'
miRNA:   3'- aUGGU-GGUCCUG-----UCGA----UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 175416 0.66 0.931385
Target:  5'- --aCGCC-GGugAGCgaUGCCGCGGCGc -3'
miRNA:   3'- augGUGGuCCugUCG--AUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 35420 0.66 0.92828
Target:  5'- gACCGCCcuGGACgacaugcuaaagcucAGCUGCCuGCGGCuGAu -3'
miRNA:   3'- aUGGUGGu-CCUG---------------UCGAUGG-CGUUG-CU- -5'
10770 3' -55.4 NC_002794.1 + 102162 0.66 0.926162
Target:  5'- gUGCgCGCCGGGGCcaucGUgGCgCGCGGCGAg -3'
miRNA:   3'- -AUG-GUGGUCCUGu---CGaUG-GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 188988 0.66 0.926162
Target:  5'- gGCCACCAGccagcGGCAGCUcuccaggUCGCGACa- -3'
miRNA:   3'- aUGGUGGUC-----CUGUCGAu------GGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 138920 0.66 0.926162
Target:  5'- gACCGCgGcGGAUGGuCUGCCGguGCGc -3'
miRNA:   3'- aUGGUGgU-CCUGUC-GAUGGCguUGCu -5'
10770 3' -55.4 NC_002794.1 + 118686 0.66 0.926162
Target:  5'- cGCCGCCGGcGGCAGCgcCCaGgAGCGc -3'
miRNA:   3'- aUGGUGGUC-CUGUCGauGG-CgUUGCu -5'
10770 3' -55.4 NC_002794.1 + 248 0.66 0.926162
Target:  5'- -cCCACCccGGACuGCcGCCGCGcgcGCGGa -3'
miRNA:   3'- auGGUGGu-CCUGuCGaUGGCGU---UGCU- -5'
10770 3' -55.4 NC_002794.1 + 44269 0.67 0.9207
Target:  5'- gGCCGCCgGGGACGGaggaguCCGCGcccgccgggccgGCGAg -3'
miRNA:   3'- aUGGUGG-UCCUGUCgau---GGCGU------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 82380 0.67 0.915001
Target:  5'- cACCGCC---GCGGCggACCGCGGCGc -3'
miRNA:   3'- aUGGUGGuccUGUCGa-UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 86475 0.67 0.915001
Target:  5'- gACCgaGCCGGGACGgauGCUccggaccgaGCCGgGACGGa -3'
miRNA:   3'- aUGG--UGGUCCUGU---CGA---------UGGCgUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 20160 0.67 0.915001
Target:  5'- cGCCGCCuGG-CGGCcccaUACCGCGA-GAg -3'
miRNA:   3'- aUGGUGGuCCuGUCG----AUGGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 123611 0.67 0.915001
Target:  5'- cGCCugUGGGACGcGCUG-CGCGAgGAc -3'
miRNA:   3'- aUGGugGUCCUGU-CGAUgGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 194707 0.67 0.909065
Target:  5'- aACCACgcgCAGcACAGCcGCCGCGucACGAa -3'
miRNA:   3'- aUGGUG---GUCcUGUCGaUGGCGU--UGCU- -5'
10770 3' -55.4 NC_002794.1 + 48249 0.67 0.909065
Target:  5'- gGCCGCagCAGGAuCAGC--CCGCAGCa- -3'
miRNA:   3'- aUGGUG--GUCCU-GUCGauGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48482 0.67 0.909065
Target:  5'- aGCCGCCGGG-CAGCgcCCaCGACa- -3'
miRNA:   3'- aUGGUGGUCCuGUCGauGGcGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 56766 0.67 0.909065
Target:  5'- gGCCAucuUCGGGAUcuacuGCaGCCGCAugGAa -3'
miRNA:   3'- aUGGU---GGUCCUGu----CGaUGGCGUugCU- -5'
10770 3' -55.4 NC_002794.1 + 111320 0.67 0.909065
Target:  5'- --aCGCCGGGcCAGCggcgcggGCCGCAgaucugccggACGAa -3'
miRNA:   3'- augGUGGUCCuGUCGa------UGGCGU----------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 33289 0.67 0.908459
Target:  5'- gACCACCAGGaguaucuGCGGCU-CUggGCGGCGu -3'
miRNA:   3'- aUGGUGGUCC-------UGUCGAuGG--CGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 118807 0.67 0.902895
Target:  5'- -cCCGCUuGGGCuuGCUGCC-CGACGAg -3'
miRNA:   3'- auGGUGGuCCUGu-CGAUGGcGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.