miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 105420 0.67 0.902895
Target:  5'- gGCCuCCAGGGUGGCcGCCGCcGCGc -3'
miRNA:   3'- aUGGuGGUCCUGUCGaUGGCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 153700 0.67 0.902895
Target:  5'- gGCgACCGGuuUAGCgACCGCGACGu -3'
miRNA:   3'- aUGgUGGUCcuGUCGaUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 118807 0.67 0.902895
Target:  5'- -cCCGCUuGGGCuuGCUGCC-CGACGAg -3'
miRNA:   3'- auGGUGGuCCUGu-CGAUGGcGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 111637 0.67 0.902895
Target:  5'- cGCCGCCGgucGGGCGccGCgGCCGCGGCc- -3'
miRNA:   3'- aUGGUGGU---CCUGU--CGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 99993 0.67 0.899081
Target:  5'- -uCgGCCAGGACGcguacuuuuacugccGCUACgGCGACGc -3'
miRNA:   3'- auGgUGGUCCUGU---------------CGAUGgCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 122097 0.67 0.896492
Target:  5'- aACCcggACCuGGGCAGCUG-CGCGACc- -3'
miRNA:   3'- aUGG---UGGuCCUGUCGAUgGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 70243 0.67 0.896492
Target:  5'- gGCCGCCcc-GCAGCagACgCGCAGCGAc -3'
miRNA:   3'- aUGGUGGuccUGUCGa-UG-GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 34044 0.67 0.896492
Target:  5'- cUGCUGCCGGGcCGGC--CCGCGcACGAc -3'
miRNA:   3'- -AUGGUGGUCCuGUCGauGGCGU-UGCU- -5'
10770 3' -55.4 NC_002794.1 + 19067 0.67 0.896492
Target:  5'- cGCCugCGGucacggugccGugAGCUGCguuCGCAACGAg -3'
miRNA:   3'- aUGGugGUC----------CugUCGAUG---GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 138993 0.67 0.896492
Target:  5'- gGCCugCgcgaAGGcuuuGCGGCUgaagagcucGCCGCGGCGAa -3'
miRNA:   3'- aUGGugG----UCC----UGUCGA---------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 147216 0.67 0.896492
Target:  5'- gGCCgggGCCGGGGC-GUUGgCGCGAUGGg -3'
miRNA:   3'- aUGG---UGGUCCUGuCGAUgGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 146992 0.67 0.896492
Target:  5'- cGCCGCCGGccgacgucGGCGGCggcgGCCGcCGGCGc -3'
miRNA:   3'- aUGGUGGUC--------CUGUCGa---UGGC-GUUGCu -5'
10770 3' -55.4 NC_002794.1 + 188763 0.67 0.896492
Target:  5'- cGCCACguGGaACAGCccGgUGCAGCGGu -3'
miRNA:   3'- aUGGUGguCC-UGUCGa-UgGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 81544 0.68 0.889859
Target:  5'- gAgCGCU-GGACGGCUGCCGCcGCc- -3'
miRNA:   3'- aUgGUGGuCCUGUCGAUGGCGuUGcu -5'
10770 3' -55.4 NC_002794.1 + 94752 0.68 0.889859
Target:  5'- -uCUACgAGGACGuGCUGCuCGuCGACGAg -3'
miRNA:   3'- auGGUGgUCCUGU-CGAUG-GC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 143675 0.68 0.889859
Target:  5'- gUACCGCguCAGGA--GCUGCCGCAGgGu -3'
miRNA:   3'- -AUGGUG--GUCCUguCGAUGGCGUUgCu -5'
10770 3' -55.4 NC_002794.1 + 137896 0.68 0.889859
Target:  5'- -cCCGCCAGGACGGUacacagguccCCGUGGCGu -3'
miRNA:   3'- auGGUGGUCCUGUCGau--------GGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 116127 0.68 0.889859
Target:  5'- -uCCGCCGcGGCGGCgGCgGCGGCGGc -3'
miRNA:   3'- auGGUGGUcCUGUCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 86093 0.68 0.883001
Target:  5'- cGCCGCCGGGACGGaUGCUcCGGCc- -3'
miRNA:   3'- aUGGUGGUCCUGUCgAUGGcGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 39533 0.68 0.883001
Target:  5'- cUACCACCuGGGGCuGCUGugcggccuCUGCGGCGc -3'
miRNA:   3'- -AUGGUGG-UCCUGuCGAU--------GGCGUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.