miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 248 0.66 0.926162
Target:  5'- -cCCACCccGGACuGCcGCCGCGcgcGCGGa -3'
miRNA:   3'- auGGUGGu-CCUGuCGaUGGCGU---UGCU- -5'
10770 3' -55.4 NC_002794.1 + 1430 0.66 0.936371
Target:  5'- gACgACCGGGAgGGggACCGgGGCGc -3'
miRNA:   3'- aUGgUGGUCCUgUCgaUGGCgUUGCu -5'
10770 3' -55.4 NC_002794.1 + 8111 0.7 0.762713
Target:  5'- cGCCACCGagcGGGCGGCggccuccucggugACCGgCGACGGc -3'
miRNA:   3'- aUGGUGGU---CCUGUCGa------------UGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 9095 0.66 0.949911
Target:  5'- gGCgACCGGGAgCAGCaACaGCAGCa- -3'
miRNA:   3'- aUGgUGGUCCU-GUCGaUGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 11856 0.69 0.820615
Target:  5'- gACCGCCGGcGACGaccGCccgccCCGCGACGGg -3'
miRNA:   3'- aUGGUGGUC-CUGU---CGau---GGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 12611 0.66 0.941119
Target:  5'- cGCCACCAGcGCGuCUgggGCCGCuuCGAg -3'
miRNA:   3'- aUGGUGGUCcUGUcGA---UGGCGuuGCU- -5'
10770 3' -55.4 NC_002794.1 + 12749 0.7 0.79421
Target:  5'- cGCUACCAGGA--GCUGCCGCucuuGCc- -3'
miRNA:   3'- aUGGUGGUCCUguCGAUGGCGu---UGcu -5'
10770 3' -55.4 NC_002794.1 + 14774 0.66 0.941119
Target:  5'- gGCCGCUgaggccggcgAGGcCGGCgugACCGCGACc- -3'
miRNA:   3'- aUGGUGG----------UCCuGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 16875 0.71 0.747408
Target:  5'- cGCCGCCGcGGCAGCaaccaccGCCGCcGCGAc -3'
miRNA:   3'- aUGGUGGUcCUGUCGa------UGGCGuUGCU- -5'
10770 3' -55.4 NC_002794.1 + 17273 0.66 0.949911
Target:  5'- -gUCACCcGGGCAcGCcGCCGcCGACGGu -3'
miRNA:   3'- auGGUGGuCCUGU-CGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 18746 0.68 0.8534
Target:  5'- --aCGCCAcGACGGCcgGCgGCAACGAc -3'
miRNA:   3'- augGUGGUcCUGUCGa-UGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 19067 0.67 0.896492
Target:  5'- cGCCugCGGucacggugccGugAGCUGCguuCGCAACGAg -3'
miRNA:   3'- aUGGugGUC----------CugUCGAUG---GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 20160 0.67 0.915001
Target:  5'- cGCCGCCuGG-CGGCcccaUACCGCGA-GAg -3'
miRNA:   3'- aUGGUGGuCCuGUCG----AUGGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 20978 0.74 0.586222
Target:  5'- cACCGgCAGcGGCGGCggcagcgACCGCGGCGGc -3'
miRNA:   3'- aUGGUgGUC-CUGUCGa------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 22894 0.66 0.941119
Target:  5'- gGCCuCCcguugguGGACGGCggcgACCGCGGCc- -3'
miRNA:   3'- aUGGuGGu------CCUGUCGa---UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 25492 0.66 0.949911
Target:  5'- aUACCACCAGauuuGAUcGCaaccaACCGCGACGc -3'
miRNA:   3'- -AUGGUGGUC----CUGuCGa----UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 26081 0.75 0.526221
Target:  5'- cGCCACgCGGGGCAGCgccgacgGCCcCGGCGAu -3'
miRNA:   3'- aUGGUG-GUCCUGUCGa------UGGcGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 26641 0.66 0.945632
Target:  5'- cGCgCACCcGGACGGCgGCCGgcucguCGGCGGg -3'
miRNA:   3'- aUG-GUGGuCCUGUCGaUGGC------GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 32299 0.69 0.820615
Target:  5'- cGCCGCCGcGGCGGCcgcgccgGCCGCGGCc- -3'
miRNA:   3'- aUGGUGGUcCUGUCGa------UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 32863 0.68 0.868623
Target:  5'- gGCCgaGCCGgcGGGCGGCgGCgGCGGCGGc -3'
miRNA:   3'- aUGG--UGGU--CCUGUCGaUGgCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.