miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 33289 0.67 0.908459
Target:  5'- gACCACCAGGaguaucuGCGGCU-CUggGCGGCGu -3'
miRNA:   3'- aUGGUGGUCC-------UGUCGAuGG--CGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 34044 0.67 0.896492
Target:  5'- cUGCUGCCGGGcCGGC--CCGCGcACGAc -3'
miRNA:   3'- -AUGGUGGUCCuGUCGauGGCGU-UGCU- -5'
10770 3' -55.4 NC_002794.1 + 34085 0.69 0.811973
Target:  5'- gGCgGCCGGGcagccgucggGCGGCccggACCGCGACGu -3'
miRNA:   3'- aUGgUGGUCC----------UGUCGa---UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 34722 0.66 0.941119
Target:  5'- cGCCACgAGGcGCgGGCgGCCGCAgagcgcGCGAc -3'
miRNA:   3'- aUGGUGgUCC-UG-UCGaUGGCGU------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 35420 0.66 0.92828
Target:  5'- gACCGCCcuGGACgacaugcuaaagcucAGCUGCCuGCGGCuGAu -3'
miRNA:   3'- aUGGUGGu-CCUG---------------UCGAUGG-CGUUG-CU- -5'
10770 3' -55.4 NC_002794.1 + 36363 0.76 0.468675
Target:  5'- gGCCACCGGGuGC-GCgcCCGCGGCGAa -3'
miRNA:   3'- aUGGUGGUCC-UGuCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 37742 0.72 0.647388
Target:  5'- cGCCGCCGGcGGCGGC-GCgGCGGCGc -3'
miRNA:   3'- aUGGUGGUC-CUGUCGaUGgCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 37884 0.7 0.803169
Target:  5'- gGCgGCgGGGGCGGUggcgGCgGCAGCGGc -3'
miRNA:   3'- aUGgUGgUCCUGUCGa---UGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 39533 0.68 0.883001
Target:  5'- cUACCACCuGGGGCuGCUGugcggccuCUGCGGCGc -3'
miRNA:   3'- -AUGGUGG-UCCUGuCGAU--------GGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 43628 0.78 0.356465
Target:  5'- gGCCGCCAGGAgcugguggaaCAcGCUGCCGCcgAACGAg -3'
miRNA:   3'- aUGGUGGUCCU----------GU-CGAUGGCG--UUGCU- -5'
10770 3' -55.4 NC_002794.1 + 44269 0.67 0.9207
Target:  5'- gGCCGCCgGGGACGGaggaguCCGCGcccgccgggccgGCGAg -3'
miRNA:   3'- aUGGUGG-UCCUGUCgau---GGCGU------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 44702 0.7 0.766495
Target:  5'- cGCCGCCcGG-CcGCgACCGCGGCGAc -3'
miRNA:   3'- aUGGUGGuCCuGuCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 44737 0.66 0.941119
Target:  5'- cGCCGCC-GGAgGGCUaagACgGCGACu- -3'
miRNA:   3'- aUGGUGGuCCUgUCGA---UGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48078 0.68 0.8534
Target:  5'- gGCCAgCGGGAgCAGCcGCCGCucgcCGGc -3'
miRNA:   3'- aUGGUgGUCCU-GUCGaUGGCGuu--GCU- -5'
10770 3' -55.4 NC_002794.1 + 48249 0.67 0.909065
Target:  5'- gGCCGCagCAGGAuCAGC--CCGCAGCa- -3'
miRNA:   3'- aUGGUG--GUCCU-GUCGauGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48449 0.69 0.829086
Target:  5'- gGCCAUCGGGACA-CaGCCGCcACGu -3'
miRNA:   3'- aUGGUGGUCCUGUcGaUGGCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 48482 0.67 0.909065
Target:  5'- aGCCGCCGGG-CAGCgcCCaCGACa- -3'
miRNA:   3'- aUGGUGGUCCuGUCGauGGcGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 48879 0.7 0.785106
Target:  5'- gGCgGCCAGGugGcaggccagcGUUGCCGCAGCu- -3'
miRNA:   3'- aUGgUGGUCCugU---------CGAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 49396 0.74 0.536081
Target:  5'- cGCCGCCGucGGccACGGCgGCCGCGGCGGc -3'
miRNA:   3'- aUGGUGGU--CC--UGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 49800 0.74 0.555987
Target:  5'- aGCCgaGCCAGGAgCAGCUcCCGCGGCc- -3'
miRNA:   3'- aUGG--UGGUCCU-GUCGAuGGCGUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.