miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 49871 0.69 0.811973
Target:  5'- cGCCACCcGGACguggAGCgcCCGCAGCc- -3'
miRNA:   3'- aUGGUGGuCCUG----UCGauGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 50728 0.69 0.820615
Target:  5'- cGCCGcCCGGGGCGGCcGCCuCGACu- -3'
miRNA:   3'- aUGGU-GGUCCUGUCGaUGGcGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 55262 0.7 0.785106
Target:  5'- cGCCgaagaGCCggGGGGCGGCggugGCgGCGACGAg -3'
miRNA:   3'- aUGG-----UGG--UCCUGUCGa---UGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 56266 0.71 0.718046
Target:  5'- gGCCACCGGGccgaGCAGCagGCgGCAgagcACGAu -3'
miRNA:   3'- aUGGUGGUCC----UGUCGa-UGgCGU----UGCU- -5'
10770 3' -55.4 NC_002794.1 + 56766 0.67 0.909065
Target:  5'- gGCCAucuUCGGGAUcuacuGCaGCCGCAugGAa -3'
miRNA:   3'- aUGGU---GGUCCUGu----CGaUGGCGUugCU- -5'
10770 3' -55.4 NC_002794.1 + 58012 0.72 0.677912
Target:  5'- cGCCGCCGGGGCcGCcGCCG--GCGAa -3'
miRNA:   3'- aUGGUGGUCCUGuCGaUGGCguUGCU- -5'
10770 3' -55.4 NC_002794.1 + 58172 0.7 0.766495
Target:  5'- cGCCGCCAGGA--GgUGCCGCGcaccaccaACGAg -3'
miRNA:   3'- aUGGUGGUCCUguCgAUGGCGU--------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 58642 0.67 0.902895
Target:  5'- cGCCACgCAgcuGGGCgacgGGCUGCUGCAGCc- -3'
miRNA:   3'- aUGGUG-GU---CCUG----UCGAUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 60778 0.66 0.945632
Target:  5'- cGCCGCCGucgaacGGACGGCUcggACCaUGACGGc -3'
miRNA:   3'- aUGGUGGU------CCUGUCGA---UGGcGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 61514 0.72 0.657586
Target:  5'- -cCCGCC-GGACGGCgGCCGcCGGCGGc -3'
miRNA:   3'- auGGUGGuCCUGUCGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 61554 0.72 0.698089
Target:  5'- cGCCGCCGcGGCGGCgGCCGCcguCGAa -3'
miRNA:   3'- aUGGUGGUcCUGUCGaUGGCGuu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 62684 0.7 0.79421
Target:  5'- cGCCugCGGGuGCAGCUgugucggcgGCCGCcgacGCGAc -3'
miRNA:   3'- aUGGugGUCC-UGUCGA---------UGGCGu---UGCU- -5'
10770 3' -55.4 NC_002794.1 + 63443 0.7 0.803169
Target:  5'- cACCACCAcGGCcGCgGCgGCGACGAu -3'
miRNA:   3'- aUGGUGGUcCUGuCGaUGgCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 63655 0.75 0.525239
Target:  5'- gACCGCCAacgucucGGACgacgAGCgcgGCCGCGGCGAc -3'
miRNA:   3'- aUGGUGGU-------CCUG----UCGa--UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 65229 0.71 0.727919
Target:  5'- -uCCACgGGcGGCGGUcGCCGCGGCGGc -3'
miRNA:   3'- auGGUGgUC-CUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 66847 0.74 0.555987
Target:  5'- cGCCGCCGucGGcGCGGCgagGCCGCGGCGu -3'
miRNA:   3'- aUGGUGGU--CC-UGUCGa--UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 67222 0.69 0.820615
Target:  5'- cGgCGCCGGG-CGGCUaACCGCGucuCGAu -3'
miRNA:   3'- aUgGUGGUCCuGUCGA-UGGCGUu--GCU- -5'
10770 3' -55.4 NC_002794.1 + 68379 0.66 0.941119
Target:  5'- cGCCGCCccccGACcuGCU-CCGCGACGGc -3'
miRNA:   3'- aUGGUGGuc--CUGu-CGAuGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 68766 0.66 0.944303
Target:  5'- gGCCGCCGGGGCgccggacgcccGGCUcUCGCGccccggcuaacaggACGAc -3'
miRNA:   3'- aUGGUGGUCCUG-----------UCGAuGGCGU--------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 69731 0.66 0.949911
Target:  5'- gUGCCGCCGgagcgccacGGcCGGCgacGCCGCGGgGAu -3'
miRNA:   3'- -AUGGUGGU---------CCuGUCGa--UGGCGUUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.