miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 195256 0.75 0.526221
Target:  5'- gACCACCccGGCGGggACUGCAGCGAc -3'
miRNA:   3'- aUGGUGGucCUGUCgaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 194707 0.67 0.909065
Target:  5'- aACCACgcgCAGcACAGCcGCCGCGucACGAa -3'
miRNA:   3'- aUGGUG---GUCcUGUCGaUGGCGU--UGCU- -5'
10770 3' -55.4 NC_002794.1 + 194524 0.66 0.931385
Target:  5'- gUGCCGCCGGcccaGCAGC-GCCGcCAGCa- -3'
miRNA:   3'- -AUGGUGGUCc---UGUCGaUGGC-GUUGcu -5'
10770 3' -55.4 NC_002794.1 + 194291 0.68 0.883001
Target:  5'- cGCCAcguccagucguCCAGcGcCAGCgccUGCCGCAGCGGa -3'
miRNA:   3'- aUGGU-----------GGUC-CuGUCG---AUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 194129 0.66 0.945632
Target:  5'- cACgGCUGaGGCAGCgGCCGCAGCa- -3'
miRNA:   3'- aUGgUGGUcCUGUCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 193978 0.68 0.861115
Target:  5'- cACCGCCGcGGCcGCUACCGCcGCc- -3'
miRNA:   3'- aUGGUGGUcCUGuCGAUGGCGuUGcu -5'
10770 3' -55.4 NC_002794.1 + 193208 0.68 0.8534
Target:  5'- cGCCACCAGGuACAGCa--CGCuuCGc -3'
miRNA:   3'- aUGGUGGUCC-UGUCGaugGCGuuGCu -5'
10770 3' -55.4 NC_002794.1 + 193075 0.68 0.8534
Target:  5'- gGCCGuCgCGGGACAGCcGCaGCAGCGu -3'
miRNA:   3'- aUGGU-G-GUCCUGUCGaUGgCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 192861 0.76 0.468675
Target:  5'- aGCacgaACCAGcGGCAGCacaGCCGCGACGAg -3'
miRNA:   3'- aUGg---UGGUC-CUGUCGa--UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 192399 0.69 0.829086
Target:  5'- cGCCgcGCCGGGGUAGUcgaaacGCCGCGACGGg -3'
miRNA:   3'- aUGG--UGGUCCUGUCGa-----UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 191995 0.71 0.747408
Target:  5'- gACgGCCGGGACGGUagcggcggugGCCGCGGCu- -3'
miRNA:   3'- aUGgUGGUCCUGUCGa---------UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 191658 0.73 0.637178
Target:  5'- -cCCGCCggGGGACGGC-GCCgGCAGCGGc -3'
miRNA:   3'- auGGUGG--UCCUGUCGaUGG-CGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 190744 0.7 0.766495
Target:  5'- cGCCGCCgucucgacgGGGGCGGCgGCCGC-GCGu -3'
miRNA:   3'- aUGGUGG---------UCCUGUCGaUGGCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 189409 0.71 0.737709
Target:  5'- -uCCGCCAGGGCcagcggguucuGCUGCCGCAGg-- -3'
miRNA:   3'- auGGUGGUCCUGu----------CGAUGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 189039 0.69 0.829086
Target:  5'- gACCGCCAGcGGCgGGCUGCgCGUcGCGu -3'
miRNA:   3'- aUGGUGGUC-CUG-UCGAUG-GCGuUGCu -5'
10770 3' -55.4 NC_002794.1 + 188988 0.66 0.926162
Target:  5'- gGCCACCAGccagcGGCAGCUcuccaggUCGCGACa- -3'
miRNA:   3'- aUGGUGGUC-----CUGUCGAu------GGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 188763 0.67 0.896492
Target:  5'- cGCCACguGGaACAGCccGgUGCAGCGGu -3'
miRNA:   3'- aUGGUGguCC-UGUCGa-UgGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 188402 0.7 0.785106
Target:  5'- cGCCGCagaCGGGACcGCcGCCGCAACu- -3'
miRNA:   3'- aUGGUG---GUCCUGuCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 187214 0.66 0.936371
Target:  5'- gACCAucuCCAGcGGCuccGGCUgGCCGCAGCa- -3'
miRNA:   3'- aUGGU---GGUC-CUG---UCGA-UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 187068 0.66 0.945632
Target:  5'- -cCCGCCAGGugccgcaGGCUGCuCGCcACGu -3'
miRNA:   3'- auGGUGGUCCug-----UCGAUG-GCGuUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.