miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 186273 0.7 0.757006
Target:  5'- cACCGCCuGGcGCGGCggcACCGCGGCc- -3'
miRNA:   3'- aUGGUGGuCC-UGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 185468 0.78 0.364401
Target:  5'- --aCGCCGcGGGCGGCgGCCGCGGCGAg -3'
miRNA:   3'- augGUGGU-CCUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 185127 0.7 0.803169
Target:  5'- cACgACCAGG-CGGC-GCCGCGuCGAg -3'
miRNA:   3'- aUGgUGGUCCuGUCGaUGGCGUuGCU- -5'
10770 3' -55.4 NC_002794.1 + 184969 0.66 0.931385
Target:  5'- aGCCGCUcgucGGGCAGCa--CGCAGCGc -3'
miRNA:   3'- aUGGUGGu---CCUGUCGaugGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 184549 0.7 0.803169
Target:  5'- cGCCGCCucuucGGACGccucacgcGCcGCCGCGGCGGc -3'
miRNA:   3'- aUGGUGGu----CCUGU--------CGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 184330 0.69 0.829086
Target:  5'- cACgGCCgGGGACAGCgacaggguCCGCAGCu- -3'
miRNA:   3'- aUGgUGG-UCCUGUCGau------GGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 184157 0.7 0.799603
Target:  5'- -uCCGCCGGcGACGGCgucuccacccgacACCGCGGCGc -3'
miRNA:   3'- auGGUGGUC-CUGUCGa------------UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 184025 0.73 0.635135
Target:  5'- gGCCGCCAcGGcaccgcgcGCAGCgcgcggucgcggGCCGCGGCGAa -3'
miRNA:   3'- aUGGUGGU-CC--------UGUCGa-----------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 182789 0.66 0.947372
Target:  5'- cACCuGCCAGcgcacggucgcggucGACAGCUcguccaGCCGCGGCa- -3'
miRNA:   3'- aUGG-UGGUC---------------CUGUCGA------UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 182531 0.68 0.868623
Target:  5'- -uCCACCAGcgcGGCAGCgacugcGCCGCGGCc- -3'
miRNA:   3'- auGGUGGUC---CUGUCGa-----UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 182215 0.68 0.87592
Target:  5'- cGCCACgGGGcuccgACGGUcagGCCGCAGCa- -3'
miRNA:   3'- aUGGUGgUCC-----UGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 181569 0.66 0.931385
Target:  5'- gGCCAaUCAGGAUcgacaGGCUgcggGCCGCGACc- -3'
miRNA:   3'- aUGGU-GGUCCUG-----UCGA----UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 179978 0.69 0.837379
Target:  5'- gGCaggaGCCAaGGCGGUgGCCGCGACGGc -3'
miRNA:   3'- aUGg---UGGUcCUGUCGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 179663 0.71 0.727919
Target:  5'- gGCuCGCC-GGACGGCacCCGCGGCGGc -3'
miRNA:   3'- aUG-GUGGuCCUGUCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 175416 0.66 0.931385
Target:  5'- --aCGCC-GGugAGCgaUGCCGCGGCGc -3'
miRNA:   3'- augGUGGuCCugUCG--AUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 153700 0.67 0.902895
Target:  5'- gGCgACCGGuuUAGCgACCGCGACGu -3'
miRNA:   3'- aUGgUGGUCcuGUCGaUGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 152557 0.69 0.829086
Target:  5'- gAgUGCCAGGAgCGGCgcuucaccGCCGCGGCGGc -3'
miRNA:   3'- aUgGUGGUCCU-GUCGa-------UGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 150034 0.66 0.949911
Target:  5'- gGCCGCCGaguGGAgCcGCUACCGacuGCGGu -3'
miRNA:   3'- aUGGUGGU---CCU-GuCGAUGGCgu-UGCU- -5'
10770 3' -55.4 NC_002794.1 + 148141 0.76 0.441131
Target:  5'- gGCCGCCGGGGCgagGGCggUCGCGACGGa -3'
miRNA:   3'- aUGGUGGUCCUG---UCGauGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 148085 0.7 0.757006
Target:  5'- gGCCucgaGCgAGGAgCAGCUGCCGCucaagaAGCGAc -3'
miRNA:   3'- aUGG----UGgUCCU-GUCGAUGGCG------UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.