Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10770 | 3' | -55.4 | NC_002794.1 | + | 97367 | 1.07 | 0.004761 |
Target: 5'- uUACCACCAGGACAGCUACCGCAACGAg -3' miRNA: 3'- -AUGGUGGUCCUGUCGAUGGCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 26641 | 0.66 | 0.945632 |
Target: 5'- cGCgCACCcGGACGGCgGCCGgcucguCGGCGGg -3' miRNA: 3'- aUG-GUGGuCCUGUCGaUGGC------GUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 187068 | 0.66 | 0.945632 |
Target: 5'- -cCCGCCAGGugccgcaGGCUGCuCGCcACGu -3' miRNA: 3'- auGGUGGUCCug-----UCGAUG-GCGuUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 194129 | 0.66 | 0.945632 |
Target: 5'- cACgGCUGaGGCAGCgGCCGCAGCa- -3' miRNA: 3'- aUGgUGGUcCUGUCGaUGGCGUUGcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 82755 | 0.66 | 0.945632 |
Target: 5'- cACCGCCGcGGACucGCU-CCGCGAa-- -3' miRNA: 3'- aUGGUGGU-CCUGu-CGAuGGCGUUgcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 129925 | 0.66 | 0.945632 |
Target: 5'- -uUCGCCAGGccguggcgACGGCgGCgGCGGCGGc -3' miRNA: 3'- auGGUGGUCC--------UGUCGaUGgCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 135456 | 0.66 | 0.941119 |
Target: 5'- gGCUcCCGGGGCccGCgGCCGaCGACGAc -3' miRNA: 3'- aUGGuGGUCCUGu-CGaUGGC-GUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 134459 | 0.66 | 0.942952 |
Target: 5'- gUGCCccuUCGGGACGGCgcucucgucgccagACCGCG-CGAc -3' miRNA: 3'- -AUGGu--GGUCCUGUCGa-------------UGGCGUuGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 68766 | 0.66 | 0.944303 |
Target: 5'- gGCCGCCGGGGCgccggacgcccGGCUcUCGCGccccggcuaacaggACGAc -3' miRNA: 3'- aUGGUGGUCCUG-----------UCGAuGGCGU--------------UGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 60778 | 0.66 | 0.945632 |
Target: 5'- cGCCGCCGucgaacGGACGGCUcggACCaUGACGGc -3' miRNA: 3'- aUGGUGGU------CCUGUCGA---UGGcGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 115311 | 0.66 | 0.945632 |
Target: 5'- cGCCGCCGuccGcACGGUcGCCGCGGCGu -3' miRNA: 3'- aUGGUGGU---CcUGUCGaUGGCGUUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 103848 | 0.66 | 0.949494 |
Target: 5'- gACCACCGagcGGGCcGCcGCCgacgagaGCGACGAg -3' miRNA: 3'- aUGGUGGU---CCUGuCGaUGG-------CGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 105925 | 0.66 | 0.949911 |
Target: 5'- cGCCGCCGccGGACgGGCUggACgCGCuguACGAa -3' miRNA: 3'- aUGGUGGU--CCUG-UCGA--UG-GCGu--UGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 25492 | 0.66 | 0.949911 |
Target: 5'- aUACCACCAGauuuGAUcGCaaccaACCGCGACGc -3' miRNA: 3'- -AUGGUGGUC----CUGuCGa----UGGCGUUGCu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 126545 | 0.66 | 0.949911 |
Target: 5'- cUACUgACCGGGaACAccGUcGCCGCGGCGGu -3' miRNA: 3'- -AUGG-UGGUCC-UGU--CGaUGGCGUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 86331 | 0.66 | 0.949911 |
Target: 5'- gACCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3' miRNA: 3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 69731 | 0.66 | 0.949911 |
Target: 5'- gUGCCGCCGgagcgccacGGcCGGCgacGCCGCGGgGAu -3' miRNA: 3'- -AUGGUGGU---------CCuGUCGa--UGGCGUUgCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 9095 | 0.66 | 0.949911 |
Target: 5'- gGCgACCGGGAgCAGCaACaGCAGCa- -3' miRNA: 3'- aUGgUGGUCCU-GUCGaUGgCGUUGcu -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 17273 | 0.66 | 0.949911 |
Target: 5'- -gUCACCcGGGCAcGCcGCCGcCGACGGu -3' miRNA: 3'- auGGUGGuCCUGU-CGaUGGC-GUUGCU- -5' |
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10770 | 3' | -55.4 | NC_002794.1 | + | 182789 | 0.66 | 0.947372 |
Target: 5'- cACCuGCCAGcgcacggucgcggucGACAGCUcguccaGCCGCGGCa- -3' miRNA: 3'- aUGG-UGGUC---------------CUGUCGA------UGGCGUUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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