miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10770 3' -55.4 NC_002794.1 + 69731 0.66 0.949911
Target:  5'- gUGCCGCCGgagcgccacGGcCGGCgacGCCGCGGgGAu -3'
miRNA:   3'- -AUGGUGGU---------CCuGUCGa--UGGCGUUgCU- -5'
10770 3' -55.4 NC_002794.1 + 86331 0.66 0.949911
Target:  5'- gACCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 126545 0.66 0.949911
Target:  5'- cUACUgACCGGGaACAccGUcGCCGCGGCGGu -3'
miRNA:   3'- -AUGG-UGGUCC-UGU--CGaUGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 25492 0.66 0.949911
Target:  5'- aUACCACCAGauuuGAUcGCaaccaACCGCGACGc -3'
miRNA:   3'- -AUGGUGGUC----CUGuCGa----UGGCGUUGCu -5'
10770 3' -55.4 NC_002794.1 + 105925 0.66 0.949911
Target:  5'- cGCCGCCGccGGACgGGCUggACgCGCuguACGAa -3'
miRNA:   3'- aUGGUGGU--CCUG-UCGA--UG-GCGu--UGCU- -5'
10770 3' -55.4 NC_002794.1 + 194129 0.66 0.945632
Target:  5'- cACgGCUGaGGCAGCgGCCGCAGCa- -3'
miRNA:   3'- aUGgUGGUcCUGUCGaUGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 82755 0.66 0.945632
Target:  5'- cACCGCCGcGGACucGCU-CCGCGAa-- -3'
miRNA:   3'- aUGGUGGU-CCUGu-CGAuGGCGUUgcu -5'
10770 3' -55.4 NC_002794.1 + 86379 0.66 0.936371
Target:  5'- gGCCgaGCCGGGACGGaugcuccggGCCGCGccCGAc -3'
miRNA:   3'- aUGG--UGGUCCUGUCga-------UGGCGUu-GCU- -5'
10770 3' -55.4 NC_002794.1 + 118206 0.66 0.936371
Target:  5'- cGCCGCCGucgccucgcGGACGGCca-CGCAGCu- -3'
miRNA:   3'- aUGGUGGU---------CCUGUCGaugGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 138949 0.66 0.936371
Target:  5'- -cCCACCGuGGCGuGCUGCgaCGCGGCGGa -3'
miRNA:   3'- auGGUGGUcCUGU-CGAUG--GCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 12611 0.66 0.941119
Target:  5'- cGCCACCAGcGCGuCUgggGCCGCuuCGAg -3'
miRNA:   3'- aUGGUGGUCcUGUcGA---UGGCGuuGCU- -5'
10770 3' -55.4 NC_002794.1 + 14774 0.66 0.941119
Target:  5'- gGCCGCUgaggccggcgAGGcCGGCgugACCGCGACc- -3'
miRNA:   3'- aUGGUGG----------UCCuGUCGa--UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 34722 0.66 0.941119
Target:  5'- cGCCACgAGGcGCgGGCgGCCGCAgagcgcGCGAc -3'
miRNA:   3'- aUGGUGgUCC-UG-UCGaUGGCGU------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 22894 0.66 0.941119
Target:  5'- gGCCuCCcguugguGGACGGCggcgACCGCGGCc- -3'
miRNA:   3'- aUGGuGGu------CCUGUCGa---UGGCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 68379 0.66 0.941119
Target:  5'- cGCCGCCccccGACcuGCU-CCGCGACGGc -3'
miRNA:   3'- aUGGUGGuc--CUGu-CGAuGGCGUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 44737 0.66 0.941119
Target:  5'- cGCCGCC-GGAgGGCUaagACgGCGACu- -3'
miRNA:   3'- aUGGUGGuCCUgUCGA---UGgCGUUGcu -5'
10770 3' -55.4 NC_002794.1 + 68766 0.66 0.944303
Target:  5'- gGCCGCCGGGGCgccggacgcccGGCUcUCGCGccccggcuaacaggACGAc -3'
miRNA:   3'- aUGGUGGUCCUG-----------UCGAuGGCGU--------------UGCU- -5'
10770 3' -55.4 NC_002794.1 + 134459 0.66 0.942952
Target:  5'- gUGCCccuUCGGGACGGCgcucucgucgccagACCGCG-CGAc -3'
miRNA:   3'- -AUGGu--GGUCCUGUCGa-------------UGGCGUuGCU- -5'
10770 3' -55.4 NC_002794.1 + 135456 0.66 0.941119
Target:  5'- gGCUcCCGGGGCccGCgGCCGaCGACGAc -3'
miRNA:   3'- aUGGuGGUCCUGu-CGaUGGC-GUUGCU- -5'
10770 3' -55.4 NC_002794.1 + 129925 0.66 0.945632
Target:  5'- -uUCGCCAGGccguggcgACGGCgGCgGCGGCGGc -3'
miRNA:   3'- auGGUGGUCC--------UGUCGaUGgCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.